National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6             1                  
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Senegal 29558 A 114 114
1 Senegal 29559 T 114 114
2 Senegal 29560 G 114 114
3 Senegal 29561 G 114 114
4 Senegal 29562 G 114 114
5 Senegal 29563 C 114 114
6 Senegal 29564 T 115 115
7 Senegal 29565 A 116 116
8 Senegal 29566 T 116 115
9 Senegal 29567 A 116 115
10 Senegal 29568 T 117 116
11 Senegal 29569 A 118 117
12 Senegal 29570 A 118 117
13 Senegal 29571 A 118 117
14 Senegal 29572 C 118 118
15 Senegal 29573 G 118 118
16 Senegal 29574 T 118 118
17 Senegal 29575 T 118 118
18 Senegal 29576 T 119 119
19 Senegal 29577 T 119 119
20 Senegal 29578 C 119 119
21 Senegal 29579 G 119 119
22 Senegal 29580 C 119 119
23 Senegal 29581 T 119 119
24 Senegal 29582 T 119 119
25 Senegal 29583 T 119 119
26 Senegal 29584 T 119 118
27 Senegal 29585 C 119 119
28 Senegal 29586 C 119 119
29 Senegal 29587 G 119 119
30 Senegal 29588 T 119 119
31 Senegal 29589 T 119 119
32 Senegal 29590 T 119 119
33 Senegal 29591 A 119 119
34 Senegal 29592 C 119 119
35 Senegal 29593 G 119 118
36 Senegal 29594 A 119 118
37 Senegal 29595 T 119 119
38 Senegal 29596 A 119 119
39 Senegal 29597 T 119 119
40 Senegal 29598 A 119 118
41 Senegal 29599 T 119 118
42 Senegal 29600 A 119 118
43 Senegal 29601 G 119 119
44 Senegal 29602 T 119 118
45 Senegal 29603 C 119 118
46 Senegal 29604 T 119 118
47 Senegal 29605 A 119 118
48 Senegal 29606 C 119 118
49 Senegal 29607 T 119 119
50 Senegal 29608 C 119 118
51 Senegal 29609 T 118 116
52 Senegal 29610 T 118 114
53 Senegal 29611 G 118 116
54 Senegal 29612 T 118 118
55 Senegal 29613 G 118 118
56 Senegal 29614 C 118 118
57 Senegal 29615 A 117 117
58 Senegal 29616 G 117 117
59 Senegal 29617 A 117 116
60 Senegal 29618 A 118 118
61 Senegal 29619 T 118 118
62 Senegal 29620 G 118 118
63 Senegal 29621 A 119 119
64 Senegal 29622 A 119 119
65 Senegal 29623 T 117 117
66 Senegal 29624 T 117 117
67 Senegal 29625 C 117 117
68 Senegal 29626 T 117 117
69 Senegal 29627 C 117 116
70 Senegal 29628 G T 117 115 Arg24Leu
71 Senegal 29629 T 117 117
72 Senegal 29630 A 117 117
73 Senegal 29631 A 117 117
74 Senegal 29632 C 117 117
75 Senegal 29633 T 117 117
76 Senegal 29634 A 116 116
77 Senegal 29635 C 116 116
78 Senegal 29636 A 116 116
79 Senegal 29637 T 116 116
80 Senegal 29638 A 115 115
81 Senegal 29639 G 116 116
82 Senegal 29640 C 115 115
83 Senegal 29641 A 115 115
84 Senegal 29642 C 115 114
85 Senegal 29643 A 115 114
86 Senegal 29644 A 115 114
87 Senegal 29645 G 115 114
88 Senegal 29646 T 114 113
89 Senegal 29647 A 114 113
90 Senegal 29648 G 114 113
91 Senegal 29649 A 114 113
92 Senegal 29650 T 114 113
93 Senegal 29651 G 114 112
94 Senegal 29652 T 114 112
95 Senegal 29653 A 114 112
96 Senegal 29654 G 114 113
97 Senegal 29655 T 114 114
98 Senegal 29656 T 114 114
99 Senegal 29657 A 114 114
100 Senegal 29658 A 114 114
101 Senegal 29659 C 114 114
102 Senegal 29660 T 114 114
103 Senegal 29661 T 114 114
104 Senegal 29662 T 114 114
105 Senegal 29663 A 114 113
106 Senegal 29664 A 114 114
107 Senegal 29665 T 114 114
108 Senegal 29666 C 113 112
109 Senegal 29667 T 112 111
110 Senegal 29668 C 112 111
111 Senegal 29669 A 111 111
112 Senegal 29670 C 111 111
113 Senegal 29671 A 111 111
114 Senegal 29672 T 109 109
115 Senegal 29673 A 109 109
116 Senegal 29674 G 109 109