National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Rwanda 29558 A 20 20
1 Rwanda 29559 T 20 20
2 Rwanda 29560 G 20 20
3 Rwanda 29561 G 20 20
4 Rwanda 29562 G 20 20
5 Rwanda 29563 C 20 20
6 Rwanda 29564 T 20 20
7 Rwanda 29565 A 20 20
8 Rwanda 29566 T 20 20
9 Rwanda 29567 A 20 20
10 Rwanda 29568 T 20 20
11 Rwanda 29569 A 20 20
12 Rwanda 29570 A 20 20
13 Rwanda 29571 A 20 20
14 Rwanda 29572 C 20 20
15 Rwanda 29573 G 20 20
16 Rwanda 29574 T 20 20
17 Rwanda 29575 T 20 20
18 Rwanda 29576 T 20 20
19 Rwanda 29577 T 20 20
20 Rwanda 29578 C 20 20
21 Rwanda 29579 G 20 20
22 Rwanda 29580 C 20 20
23 Rwanda 29581 T 20 20
24 Rwanda 29582 T 20 20
25 Rwanda 29583 T 20 20
26 Rwanda 29584 T 20 20
27 Rwanda 29585 C 20 20
28 Rwanda 29586 C 20 20
29 Rwanda 29587 G 20 20
30 Rwanda 29588 T 20 20
31 Rwanda 29589 T 20 20
32 Rwanda 29590 T 20 20
33 Rwanda 29591 A 20 20
34 Rwanda 29592 C 20 20
35 Rwanda 29593 G 20 20
36 Rwanda 29594 A 20 20
37 Rwanda 29595 T 20 20
38 Rwanda 29596 A 20 20
39 Rwanda 29597 T 20 20
40 Rwanda 29598 A 20 20
41 Rwanda 29599 T 20 20
42 Rwanda 29600 A 20 20
43 Rwanda 29601 G 20 20
44 Rwanda 29602 T 20 20
45 Rwanda 29603 C 20 20
46 Rwanda 29604 T 20 20
47 Rwanda 29605 A 20 20
48 Rwanda 29606 C 20 20
49 Rwanda 29607 T 20 20
50 Rwanda 29608 C 20 20
51 Rwanda 29609 T 20 20
52 Rwanda 29610 T 20 20
53 Rwanda 29611 G 20 20
54 Rwanda 29612 T 20 20
55 Rwanda 29613 G 20 20
56 Rwanda 29614 C 20 20
57 Rwanda 29615 A 20 20
58 Rwanda 29616 G 20 20
59 Rwanda 29617 A 20 20
60 Rwanda 29618 A 20 20
61 Rwanda 29619 T 20 20
62 Rwanda 29620 G 20 20
63 Rwanda 29621 A 20 20
64 Rwanda 29622 A 20 20
65 Rwanda 29623 T 20 20
66 Rwanda 29624 T 20 20
67 Rwanda 29625 C 20 20
68 Rwanda 29626 T 20 20
69 Rwanda 29627 C 20 20
70 Rwanda 29628 G 20 20
71 Rwanda 29629 T 20 20
72 Rwanda 29630 A 20 20
73 Rwanda 29631 A 20 20
74 Rwanda 29632 C 20 20
75 Rwanda 29633 T 20 20
76 Rwanda 29634 A 20 20
77 Rwanda 29635 C 20 20
78 Rwanda 29636 A 20 20
79 Rwanda 29637 T 20 20
80 Rwanda 29638 A 20 20
81 Rwanda 29639 G 20 20
82 Rwanda 29640 C 20 20
83 Rwanda 29641 A 20 20
84 Rwanda 29642 C 20 20
85 Rwanda 29643 A 20 20
86 Rwanda 29644 A 20 20
87 Rwanda 29645 G 20 20
88 Rwanda 29646 T 20 20
89 Rwanda 29647 A 20 20
90 Rwanda 29648 G 20 20
91 Rwanda 29649 A 20 20
92 Rwanda 29650 T 20 20
93 Rwanda 29651 G 20 20
94 Rwanda 29652 T 20 20
95 Rwanda 29653 A 20 20
96 Rwanda 29654 G 20 20
97 Rwanda 29655 T 20 20
98 Rwanda 29656 T 20 20
99 Rwanda 29657 A 20 20
100 Rwanda 29658 A 20 20
101 Rwanda 29659 C 20 20
102 Rwanda 29660 T 20 20
103 Rwanda 29661 T 20 20
104 Rwanda 29662 T 20 20
105 Rwanda 29663 A 20 20
106 Rwanda 29664 A 20 20
107 Rwanda 29665 T 20 20
108 Rwanda 29666 C 20 20
109 Rwanda 29667 T 20 20
110 Rwanda 29668 C 20 20
111 Rwanda 29669 A 20 20
112 Rwanda 29670 C 20 20
113 Rwanda 29671 A 20 20
114 Rwanda 29672 T 20 20
115 Rwanda 29673 A 20 20
116 Rwanda 29674 G 20 20