National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I K L M N P Q R S T V Y
*     2                                  
-     117                                  
?                                        
A     6                               2  
C     3   1                              
D     3                                 1
F     12       1                          
G     3                                  
I     9                               2  
K                                        
L     12       1                          
M     6             1                    
N     16     1             2             1
P     3               1     1     1      
Q 1   3                                  
R     6   1                              
S     6       1                          
T     6           1                      
V     12               1               1  
Y     9                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Russia 29558 A 1806 1806
1 Russia 29559 T 1807 1807
2 Russia 29560 G 1807 1807
3 Russia 29561 G 1807 1807
4 Russia 29562 G 1807 1807
5 Russia 29563 C 1807 1807
6 Russia 29564 T 1807 1807
7 Russia 29565 A 1807 1807
8 Russia 29566 T 1807 1807
9 Russia 29567 A G 1807 1805 Ile4Val
10 Russia 29568 T 1807 1807
11 Russia 29569 A 1807 1807
12 Russia 29570 A G 1807 1806 Asn5Asp
13 Russia 29571 A 1807 1807
14 Russia 29572 C 1807 1807
15 Russia 29573 G 1807 1807
16 Russia 29574 T 1807 1807
17 Russia 29575 T 1807 1807
18 Russia 29576 T 1807 1807
19 Russia 29577 T 1807 1807
20 Russia 29578 C T 1807 1803 Phe7Phe
21 Russia 29579 G 1807 1807
22 Russia 29580 C T 1807 1806 Ala8Val
23 Russia 29581 T 1807 1807
24 Russia 29582 T 1807 1807
25 Russia 29583 T 1807 1807
26 Russia 29584 T 1807 1807
27 Russia 29585 C T 1807 1799 Pro10Ser
28 Russia 29586 C T 1807 1806 Pro10Leu
29 Russia 29587 G A 1807 1806 Pro10Pro
30 Russia 29588 T 1807 1807
31 Russia 29589 T 1807 1807
32 Russia 29590 T 1807 1807
33 Russia 29591 A 1807 1807
34 Russia 29592 C 1807 1807
35 Russia 29593 G 1807 1807
36 Russia 29594 A G 1807 1806 Ile13Val
37 Russia 29595 T 1807 1807
38 Russia 29596 A 1807 1807
39 Russia 29597 T 1807 1807
40 Russia 29598 A 1807 1807
41 Russia 29599 T 1807 1807
42 Russia 29600 A 1807 1807
43 Russia 29601 G 1807 1807
44 Russia 29602 T 1807 1807
45 Russia 29603 C 1807 1807
46 Russia 29604 T 1807 1807
47 Russia 29605 A 1807 1807
48 Russia 29606 C 1807 1807
49 Russia 29607 T 1807 1807
50 Russia 29608 C 1807 1807
51 Russia 29609 T 1807 1807
52 Russia 29610 T 1807 1807
53 Russia 29611 G 1803 1803
54 Russia 29612 T 1802 1802
55 Russia 29613 G 1802 1802
56 Russia 29614 C T 1802 1798 Cys19Cys
57 Russia 29615 A 1802 1802
58 Russia 29616 G 1802 1802
59 Russia 29617 A 1802 1802
60 Russia 29618 A 1802 1802
61 Russia 29619 T A 1802 1801 Met21Lys
62 Russia 29620 G 1802 1802
63 Russia 29621 A T 1802 1801 Asn22Tyr
64 Russia 29622 A 1802 1802
65 Russia 29623 T C 1801 1791 Asn22Asn
66 Russia 29624 T 1801 1801
67 Russia 29625 C T 1801 1799 Ser23Phe
68 Russia 29626 T 1801 1801
69 Russia 29627 C T 1801 1797 Arg24Cys
70 Russia 29628 G 1801 1801
71 Russia 29629 T 1801 1801
72 Russia 29630 A 1801 1801
73 Russia 29631 A 1801 1801
74 Russia 29632 C T 1801 1800 Asn25Asn
75 Russia 29633 T 1801 1801
76 Russia 29634 A 1801 1801
77 Russia 29635 C 1801 1801
78 Russia 29636 A 1801 1801
79 Russia 29637 T 1801 1801
80 Russia 29638 A 1801 1801
81 Russia 29639 G 1801 1801
82 Russia 29640 C T 1801 1800 Ala28Val
83 Russia 29641 A 1801 1801
84 Russia 29642 C T 1801 1795 Gln29*
85 Russia 29643 A 1801 1801
86 Russia 29644 A 1801 1801
87 Russia 29645 G T 1801 1799 Val30Leu
88 Russia 29646 T 1801 1801
89 Russia 29647 A G 1801 1800 Val30Val
90 Russia 29648 G T 1801 1800 Asp31Tyr
91 Russia 29649 A 1801 1801
92 Russia 29650 T 1801 1801
93 Russia 29651 G 1801 1801
94 Russia 29652 T 1801 1801
95 Russia 29653 A 1801 1801
96 Russia 29654 G 1801 1801
97 Russia 29655 T 1801 1801
98 Russia 29656 T 1801 1801
99 Russia 29657 A 1801 1801
100 Russia 29658 A 1801 1801
101 Russia 29659 C 1801 1801
102 Russia 29660 T 1801 1801
103 Russia 29661 T 1801 1801
104 Russia 29662 T 1801 1801
105 Russia 29663 A 1801 1801
106 Russia 29664 A 1801 1801
107 Russia 29665 T 1801 1801
108 Russia 29666 C T 1790 1787 Leu37Phe
109 Russia 29667 T 1790 1790
110 Russia 29668 C 1790 1790
111 Russia 29669 A 1790 1790
112 Russia 29670 C T 1790 1789 Thr38Ile
113 Russia 29671 A 1790 1790
114 Russia 29672 T 1790 1790
115 Russia 29673 A 1790 1790
116 Russia 29674 G 1790 1790