National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12             1                  
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Romania 29558 A 380 380
1 Romania 29559 T 380 380
2 Romania 29560 G 382 382
3 Romania 29561 G 382 382
4 Romania 29562 G 382 382
5 Romania 29563 C 382 382
6 Romania 29564 T 382 382
7 Romania 29565 A 382 382
8 Romania 29566 T 382 382
9 Romania 29567 A 382 382
10 Romania 29568 T 382 382
11 Romania 29569 A 382 382
12 Romania 29570 A 382 382
13 Romania 29571 A 382 382
14 Romania 29572 C 382 382
15 Romania 29573 G 382 382
16 Romania 29574 T 382 382
17 Romania 29575 T 382 382
18 Romania 29576 T 382 382
19 Romania 29577 T 382 382
20 Romania 29578 C 382 382
21 Romania 29579 G 382 382
22 Romania 29580 C 382 382
23 Romania 29581 T 382 382
24 Romania 29582 T 382 382
25 Romania 29583 T 382 382
26 Romania 29584 T 382 382
27 Romania 29585 C 382 382
28 Romania 29586 C 382 382
29 Romania 29587 G 382 380
30 Romania 29588 T C 382 378 Phe11Leu
31 Romania 29589 T 382 380
32 Romania 29590 T 382 380
33 Romania 29591 A 382 382
34 Romania 29592 C 382 382
35 Romania 29593 G 382 382
36 Romania 29594 A 382 382
37 Romania 29595 T 382 382
38 Romania 29596 A 382 382
39 Romania 29597 T 382 382
40 Romania 29598 A 382 382
41 Romania 29599 T 382 382
42 Romania 29600 A 382 382
43 Romania 29601 G 382 382
44 Romania 29602 T 382 382
45 Romania 29603 C 382 382
46 Romania 29604 T 382 382
47 Romania 29605 A 382 382
48 Romania 29606 C 382 382
49 Romania 29607 T 382 382
50 Romania 29608 C 382 382
51 Romania 29609 T 382 382
52 Romania 29610 T 382 382
53 Romania 29611 G 382 382
54 Romania 29612 T 382 382
55 Romania 29613 G 382 382
56 Romania 29614 C 382 382
57 Romania 29615 A 382 382
58 Romania 29616 G 382 382
59 Romania 29617 A 382 382
60 Romania 29618 A 382 382
61 Romania 29619 T 382 382
62 Romania 29620 G 382 382
63 Romania 29621 A 382 382
64 Romania 29622 A 382 382
65 Romania 29623 T 382 382
66 Romania 29624 T 382 382
67 Romania 29625 C 382 382
68 Romania 29626 T 382 382
69 Romania 29627 C 382 382
70 Romania 29628 G 382 382
71 Romania 29629 T 382 382
72 Romania 29630 A 382 382
73 Romania 29631 A 382 382
74 Romania 29632 C 382 382
75 Romania 29633 T 382 382
76 Romania 29634 A 382 382
77 Romania 29635 C 382 382
78 Romania 29636 A 382 382
79 Romania 29637 T 382 382
80 Romania 29638 A 382 382
81 Romania 29639 G 382 382
82 Romania 29640 C 382 382
83 Romania 29641 A 382 382
84 Romania 29642 C 382 382
85 Romania 29643 A 382 382
86 Romania 29644 A 382 382
87 Romania 29645 G T 382 380 Val30Leu
88 Romania 29646 T 382 382
89 Romania 29647 A 382 382
90 Romania 29648 G 382 382
91 Romania 29649 A 382 382
92 Romania 29650 T 382 382
93 Romania 29651 G 382 382
94 Romania 29652 T 382 382
95 Romania 29653 A 382 382
96 Romania 29654 G 382 382
97 Romania 29655 T 382 382
98 Romania 29656 T 382 382
99 Romania 29657 A 382 382
100 Romania 29658 A 382 382
101 Romania 29659 C 382 382
102 Romania 29660 T 382 382
103 Romania 29661 T 382 382
104 Romania 29662 T 382 382
105 Romania 29663 A 382 382
106 Romania 29664 A 382 382
107 Romania 29665 T 382 382
108 Romania 29666 C 382 382
109 Romania 29667 T 382 382
110 Romania 29668 C 382 382
111 Romania 29669 A 382 382
112 Romania 29670 C 382 382
113 Romania 29671 A 382 382
114 Romania 29672 T 382 382
115 Romania 29673 A 382 382
116 Romania 29674 G 382 382