National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Republic_of_Congo 29558 A 11 11
1 Republic_of_Congo 29559 T 11 11
2 Republic_of_Congo 29560 G 11 11
3 Republic_of_Congo 29561 G 11 11
4 Republic_of_Congo 29562 G 11 11
5 Republic_of_Congo 29563 C 11 11
6 Republic_of_Congo 29564 T 11 11
7 Republic_of_Congo 29565 A 11 11
8 Republic_of_Congo 29566 T 11 11
9 Republic_of_Congo 29567 A 11 11
10 Republic_of_Congo 29568 T 11 11
11 Republic_of_Congo 29569 A 11 11
12 Republic_of_Congo 29570 A 11 11
13 Republic_of_Congo 29571 A 11 11
14 Republic_of_Congo 29572 C 11 11
15 Republic_of_Congo 29573 G 11 11
16 Republic_of_Congo 29574 T 11 11
17 Republic_of_Congo 29575 T 11 11
18 Republic_of_Congo 29576 T 11 11
19 Republic_of_Congo 29577 T 11 11
20 Republic_of_Congo 29578 C 11 11
21 Republic_of_Congo 29579 G 11 11
22 Republic_of_Congo 29580 C 11 11
23 Republic_of_Congo 29581 T 11 11
24 Republic_of_Congo 29582 T 11 11
25 Republic_of_Congo 29583 T 11 11
26 Republic_of_Congo 29584 T 11 11
27 Republic_of_Congo 29585 C 11 11
28 Republic_of_Congo 29586 C 11 11
29 Republic_of_Congo 29587 G 11 11
30 Republic_of_Congo 29588 T 11 11
31 Republic_of_Congo 29589 T 11 11
32 Republic_of_Congo 29590 T 11 11
33 Republic_of_Congo 29591 A 11 11
34 Republic_of_Congo 29592 C 11 11
35 Republic_of_Congo 29593 G 11 11
36 Republic_of_Congo 29594 A 11 11
37 Republic_of_Congo 29595 T 11 11
38 Republic_of_Congo 29596 A 11 11
39 Republic_of_Congo 29597 T 11 11
40 Republic_of_Congo 29598 A 11 11
41 Republic_of_Congo 29599 T 11 11
42 Republic_of_Congo 29600 A 11 11
43 Republic_of_Congo 29601 G 11 11
44 Republic_of_Congo 29602 T 11 11
45 Republic_of_Congo 29603 C 11 11
46 Republic_of_Congo 29604 T 11 11
47 Republic_of_Congo 29605 A 11 11
48 Republic_of_Congo 29606 C 11 11
49 Republic_of_Congo 29607 T 11 11
50 Republic_of_Congo 29608 C 11 11
51 Republic_of_Congo 29609 T 11 11
52 Republic_of_Congo 29610 T 11 11
53 Republic_of_Congo 29611 G 11 11
54 Republic_of_Congo 29612 T 11 11
55 Republic_of_Congo 29613 G 11 11
56 Republic_of_Congo 29614 C 11 11
57 Republic_of_Congo 29615 A 11 11
58 Republic_of_Congo 29616 G 11 11
59 Republic_of_Congo 29617 A 11 11
60 Republic_of_Congo 29618 A 11 11
61 Republic_of_Congo 29619 T 11 11
62 Republic_of_Congo 29620 G 11 11
63 Republic_of_Congo 29621 A 11 11
64 Republic_of_Congo 29622 A 11 11
65 Republic_of_Congo 29623 T 11 11
66 Republic_of_Congo 29624 T 11 11
67 Republic_of_Congo 29625 C 11 11
68 Republic_of_Congo 29626 T 11 11
69 Republic_of_Congo 29627 C 11 11
70 Republic_of_Congo 29628 G 11 11
71 Republic_of_Congo 29629 T 11 11
72 Republic_of_Congo 29630 A 11 11
73 Republic_of_Congo 29631 A 11 11
74 Republic_of_Congo 29632 C 11 11
75 Republic_of_Congo 29633 T 11 11
76 Republic_of_Congo 29634 A 11 11
77 Republic_of_Congo 29635 C 11 11
78 Republic_of_Congo 29636 A 11 11
79 Republic_of_Congo 29637 T 11 11
80 Republic_of_Congo 29638 A 11 11
81 Republic_of_Congo 29639 G 11 11
82 Republic_of_Congo 29640 C 11 11
83 Republic_of_Congo 29641 A 11 11
84 Republic_of_Congo 29642 C 11 11
85 Republic_of_Congo 29643 A 11 11
86 Republic_of_Congo 29644 A 11 11
87 Republic_of_Congo 29645 G 11 11
88 Republic_of_Congo 29646 T 11 11
89 Republic_of_Congo 29647 A 11 11
90 Republic_of_Congo 29648 G 11 11
91 Republic_of_Congo 29649 A 11 11
92 Republic_of_Congo 29650 T 11 11
93 Republic_of_Congo 29651 G 11 11
94 Republic_of_Congo 29652 T 11 11
95 Republic_of_Congo 29653 A 11 11
96 Republic_of_Congo 29654 G 11 11
97 Republic_of_Congo 29655 T 11 11
98 Republic_of_Congo 29656 T 11 11
99 Republic_of_Congo 29657 A 11 11
100 Republic_of_Congo 29658 A 11 11
101 Republic_of_Congo 29659 C 11 11
102 Republic_of_Congo 29660 T 11 11
103 Republic_of_Congo 29661 T 11 11
104 Republic_of_Congo 29662 T 11 11
105 Republic_of_Congo 29663 A 11 11
106 Republic_of_Congo 29664 A 11 11
107 Republic_of_Congo 29665 T 11 11
108 Republic_of_Congo 29666 C 11 11
109 Republic_of_Congo 29667 T 11 11
110 Republic_of_Congo 29668 C 11 11
111 Republic_of_Congo 29669 A 11 11
112 Republic_of_Congo 29670 C 11 11
113 Republic_of_Congo 29671 A 11 11
114 Republic_of_Congo 29672 T 11 11
115 Republic_of_Congo 29673 A 11 11
116 Republic_of_Congo 29674 G 11 11