National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Qatar 29558 A 16 16
1 Qatar 29559 T 16 16
2 Qatar 29560 G 16 16
3 Qatar 29561 G 16 16
4 Qatar 29562 G 16 16
5 Qatar 29563 C 16 16
6 Qatar 29564 T 16 16
7 Qatar 29565 A 16 16
8 Qatar 29566 T 16 16
9 Qatar 29567 A 16 16
10 Qatar 29568 T 16 16
11 Qatar 29569 A 16 16
12 Qatar 29570 A 16 16
13 Qatar 29571 A 16 16
14 Qatar 29572 C 16 16
15 Qatar 29573 G 16 16
16 Qatar 29574 T 16 16
17 Qatar 29575 T 16 16
18 Qatar 29576 T 16 16
19 Qatar 29577 T 16 16
20 Qatar 29578 C 16 16
21 Qatar 29579 G 16 16
22 Qatar 29580 C 16 16
23 Qatar 29581 T 16 16
24 Qatar 29582 T 16 16
25 Qatar 29583 T 16 16
26 Qatar 29584 T 16 16
27 Qatar 29585 C 16 16
28 Qatar 29586 C 16 16
29 Qatar 29587 G 16 16
30 Qatar 29588 T 16 16
31 Qatar 29589 T 16 16
32 Qatar 29590 T 16 16
33 Qatar 29591 A 16 16
34 Qatar 29592 C 16 16
35 Qatar 29593 G 16 16
36 Qatar 29594 A 16 16
37 Qatar 29595 T 16 16
38 Qatar 29596 A 16 16
39 Qatar 29597 T 16 16
40 Qatar 29598 A 16 16
41 Qatar 29599 T 16 16
42 Qatar 29600 A 16 16
43 Qatar 29601 G 16 16
44 Qatar 29602 T 16 16
45 Qatar 29603 C 16 16
46 Qatar 29604 T 16 16
47 Qatar 29605 A 16 16
48 Qatar 29606 C 16 16
49 Qatar 29607 T 16 16
50 Qatar 29608 C 16 16
51 Qatar 29609 T 16 16
52 Qatar 29610 T 16 16
53 Qatar 29611 G 16 16
54 Qatar 29612 T 16 16
55 Qatar 29613 G 16 16
56 Qatar 29614 C 16 16
57 Qatar 29615 A 16 16
58 Qatar 29616 G 16 16
59 Qatar 29617 A 16 16
60 Qatar 29618 A 16 16
61 Qatar 29619 T 16 16
62 Qatar 29620 G 16 16
63 Qatar 29621 A 16 16
64 Qatar 29622 A 16 16
65 Qatar 29623 T 16 16
66 Qatar 29624 T 16 16
67 Qatar 29625 C 16 16
68 Qatar 29626 T 16 16
69 Qatar 29627 C 16 16
70 Qatar 29628 G 16 16
71 Qatar 29629 T 16 16
72 Qatar 29630 A 16 16
73 Qatar 29631 A 16 16
74 Qatar 29632 C 16 16
75 Qatar 29633 T 16 16
76 Qatar 29634 A 16 16
77 Qatar 29635 C 16 16
78 Qatar 29636 A 16 16
79 Qatar 29637 T 16 16
80 Qatar 29638 A 16 16
81 Qatar 29639 G 16 16
82 Qatar 29640 C 16 16
83 Qatar 29641 A 16 16
84 Qatar 29642 C 16 16
85 Qatar 29643 A 16 16
86 Qatar 29644 A 16 16
87 Qatar 29645 G 16 16
88 Qatar 29646 T 16 16
89 Qatar 29647 A 16 16
90 Qatar 29648 G 16 16
91 Qatar 29649 A 16 16
92 Qatar 29650 T 16 16
93 Qatar 29651 G 16 16
94 Qatar 29652 T 16 16
95 Qatar 29653 A 16 16
96 Qatar 29654 G 16 16
97 Qatar 29655 T 16 16
98 Qatar 29656 T 16 16
99 Qatar 29657 A 16 16
100 Qatar 29658 A 16 16
101 Qatar 29659 C 16 16
102 Qatar 29660 T 16 16
103 Qatar 29661 T 16 16
104 Qatar 29662 T 16 16
105 Qatar 29663 A 16 16
106 Qatar 29664 A 16 16
107 Qatar 29665 T 16 16
108 Qatar 29666 C 16 16
109 Qatar 29667 T 16 16
110 Qatar 29668 C 16 16
111 Qatar 29669 A 16 16
112 Qatar 29670 C 16 16
113 Qatar 29671 A 16 16
114 Qatar 29672 T 16 16
115 Qatar 29673 A 16 16
116 Qatar 29674 G 16 16