National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             1  
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                 2              
P     3             1     1     1      
Q     3                                
R     6   1                            
S     6                                
T     6                                
V     12 1           1                  
Y     9   1                           1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Portugal 29558 A 2387 2387
1 Portugal 29559 T 2387 2387
2 Portugal 29560 G 2387 2387
3 Portugal 29561 G 2387 2387
4 Portugal 29562 G 2387 2387
5 Portugal 29563 C 2387 2387
6 Portugal 29564 T 2387 2387
7 Portugal 29565 A 2387 2387
8 Portugal 29566 T 2387 2387
9 Portugal 29567 A 2387 2387
10 Portugal 29568 T 2387 2387
11 Portugal 29569 A 2387 2387
12 Portugal 29570 A 2387 2387
13 Portugal 29571 A 2387 2387
14 Portugal 29572 C 2387 2387
15 Portugal 29573 G 2387 2387
16 Portugal 29574 T C 2387 2380 Val6Ala
17 Portugal 29575 T 2387 2387
18 Portugal 29576 T 2387 2387
19 Portugal 29577 T 2388 2388
20 Portugal 29578 C 2388 2387
21 Portugal 29579 G 2388 2388
22 Portugal 29580 C 2388 2388
23 Portugal 29581 T 2388 2387
24 Portugal 29582 T 2388 2388
25 Portugal 29583 T 2388 2388
26 Portugal 29584 T 2388 2388
27 Portugal 29585 C T 2388 2387 Pro10Ser
28 Portugal 29586 C T 2388 2386 Pro10Leu
29 Portugal 29587 G T 2389 2388 Pro10Pro
30 Portugal 29588 T 2389 2388
31 Portugal 29589 T 2389 2388
32 Portugal 29590 T 2389 2389
33 Portugal 29591 A 2389 2389
34 Portugal 29592 C 2389 2389
35 Portugal 29593 G 2389 2389
36 Portugal 29594 A 2389 2389
37 Portugal 29595 T 2389 2388
38 Portugal 29596 A 2389 2389
39 Portugal 29597 T 2389 2389
40 Portugal 29598 A G 2389 2388 Tyr14Cys
41 Portugal 29599 T 2389 2389
42 Portugal 29600 A 2389 2389
43 Portugal 29601 G 2389 2389
44 Portugal 29602 T 2389 2389
45 Portugal 29603 C 2389 2389
46 Portugal 29604 T 2390 2390
47 Portugal 29605 A 2390 2390
48 Portugal 29606 C 2390 2390
49 Portugal 29607 T 2390 2390
50 Portugal 29608 C 2387 2387
51 Portugal 29609 T 2387 2387
52 Portugal 29610 T 2387 2387
53 Portugal 29611 G 2387 2387
54 Portugal 29612 T 2387 2387
55 Portugal 29613 G 2387 2387
56 Portugal 29614 C 2387 2387
57 Portugal 29615 A 2387 2387
58 Portugal 29616 G 2387 2387
59 Portugal 29617 A 2387 2387
60 Portugal 29618 A 2387 2387
61 Portugal 29619 T 2387 2385
62 Portugal 29620 G 2387 2386
63 Portugal 29621 A 2387 2386
64 Portugal 29622 A 2387 2385
65 Portugal 29623 T 2387 2386
66 Portugal 29624 T 2387 2386
67 Portugal 29625 C 2387 2386
68 Portugal 29626 T 2387 2385
69 Portugal 29627 C T 2387 2384 Arg24Cys
70 Portugal 29628 G 2387 2386
71 Portugal 29629 T 2387 2385
72 Portugal 29630 A 2387 2386
73 Portugal 29631 A 2387 2386
74 Portugal 29632 C T 2387 2385 Asn25Asn
75 Portugal 29633 T 2387 2387
76 Portugal 29634 A 2387 2387
77 Portugal 29635 C T 2387 2386 Tyr26Tyr
78 Portugal 29636 A 2387 2387
79 Portugal 29637 T 2386 2386
80 Portugal 29638 A 2386 2386
81 Portugal 29639 G 2386 2386
82 Portugal 29640 C T 2386 2383 Ala28Val
83 Portugal 29641 A 2386 2386
84 Portugal 29642 C 2386 2386
85 Portugal 29643 A 2386 2386
86 Portugal 29644 A 2386 2386
87 Portugal 29645 G T 2386 2032 Val30Leu
88 Portugal 29646 T 2386 2386
89 Portugal 29647 A 2385 2385
90 Portugal 29648 G 2385 2385
91 Portugal 29649 A 2385 2385
92 Portugal 29650 T 2385 2385
93 Portugal 29651 G 2384 2384
94 Portugal 29652 T 2384 2384
95 Portugal 29653 A 2384 2383
96 Portugal 29654 G 2384 2383
97 Portugal 29655 T 2384 2383
98 Portugal 29656 T 2384 2384
99 Portugal 29657 A 2380 2376
100 Portugal 29658 A 2380 2379
101 Portugal 29659 C T 2379 2374 Asn34Asn
102 Portugal 29660 T 2378 2378
103 Portugal 29661 T 2377 2377
104 Portugal 29662 T 2373 2373
105 Portugal 29663 A 2373 2373
106 Portugal 29664 A 2371 2371
107 Portugal 29665 T 2371 2371
108 Portugal 29666 C 2370 2370
109 Portugal 29667 T 2369 2369
110 Portugal 29668 C 2369 2369
111 Portugal 29669 A 2369 2369
112 Portugal 29670 C 2369 2369
113 Portugal 29671 A 2368 2368
114 Portugal 29672 T 2368 2367
115 Portugal 29673 A 2368 2368
116 Portugal 29674 G 2365 2365