National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                             1  
L     12                                
M     6                                
N     16                                
P     3                                
Q 1   3                                
R     6             1                  
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Poland 29558 A 433 433
1 Poland 29559 T 433 433
2 Poland 29560 G 433 433
3 Poland 29561 G 433 433
4 Poland 29562 G 433 433
5 Poland 29563 C 433 433
6 Poland 29564 T 433 433
7 Poland 29565 A 433 433
8 Poland 29566 T 433 433
9 Poland 29567 A G 433 430 Ile4Val
10 Poland 29568 T 433 433
11 Poland 29569 A 433 433
12 Poland 29570 A 433 433
13 Poland 29571 A 433 433
14 Poland 29572 C 433 433
15 Poland 29573 G 433 433
16 Poland 29574 T 433 433
17 Poland 29575 T 433 433
18 Poland 29576 T 433 433
19 Poland 29577 T 433 433
20 Poland 29578 C 433 433
21 Poland 29579 G 433 433
22 Poland 29580 C 433 433
23 Poland 29581 T 433 433
24 Poland 29582 T 433 433
25 Poland 29583 T 433 433
26 Poland 29584 T 433 433
27 Poland 29585 C 433 433
28 Poland 29586 C 433 433
29 Poland 29587 G 433 433
30 Poland 29588 T 433 433
31 Poland 29589 T 433 433
32 Poland 29590 T 433 433
33 Poland 29591 A 433 433
34 Poland 29592 C 433 433
35 Poland 29593 G 433 433
36 Poland 29594 A 433 433
37 Poland 29595 T 433 433
38 Poland 29596 A 433 433
39 Poland 29597 T 433 433
40 Poland 29598 A 433 433
41 Poland 29599 T 433 433
42 Poland 29600 A 433 433
43 Poland 29601 G 433 433
44 Poland 29602 T 433 433
45 Poland 29603 C 433 433
46 Poland 29604 T 433 433
47 Poland 29605 A 433 433
48 Poland 29606 C 433 433
49 Poland 29607 T 433 433
50 Poland 29608 C 433 433
51 Poland 29609 T 433 433
52 Poland 29610 T 433 433
53 Poland 29611 G 433 433
54 Poland 29612 T 433 433
55 Poland 29613 G 433 433
56 Poland 29614 C 433 433
57 Poland 29615 A 433 433
58 Poland 29616 G 433 433
59 Poland 29617 A 433 433
60 Poland 29618 A 433 433
61 Poland 29619 T 433 433
62 Poland 29620 G 433 433
63 Poland 29621 A 433 433
64 Poland 29622 A 433 433
65 Poland 29623 T 433 433
66 Poland 29624 T 433 433
67 Poland 29625 C 433 433
68 Poland 29626 T 433 433
69 Poland 29627 C 433 433
70 Poland 29628 G T 433 432 Arg24Leu
71 Poland 29629 T 433 433
72 Poland 29630 A 433 433
73 Poland 29631 A 433 433
74 Poland 29632 C 433 433
75 Poland 29633 T 433 433
76 Poland 29634 A 433 433
77 Poland 29635 C 433 433
78 Poland 29636 A 433 433
79 Poland 29637 T 433 433
80 Poland 29638 A 433 433
81 Poland 29639 G 433 433
82 Poland 29640 C 433 433
83 Poland 29641 A 433 433
84 Poland 29642 C T 433 431 Gln29*
85 Poland 29643 A 433 433
86 Poland 29644 A 433 433
87 Poland 29645 G T 433 421 Val30Leu
88 Poland 29646 T 433 433
89 Poland 29647 A 433 433
90 Poland 29648 G 433 433
91 Poland 29649 A 433 433
92 Poland 29650 T 433 433
93 Poland 29651 G 433 433
94 Poland 29652 T 433 433
95 Poland 29653 A 433 433
96 Poland 29654 G 433 433
97 Poland 29655 T 433 433
98 Poland 29656 T 433 433
99 Poland 29657 A 433 433
100 Poland 29658 A 433 433
101 Poland 29659 C 433 433
102 Poland 29660 T 433 433
103 Poland 29661 T 433 433
104 Poland 29662 T 433 433
105 Poland 29663 A 433 433
106 Poland 29664 A 433 433
107 Poland 29665 T 433 433
108 Poland 29666 C 432 432
109 Poland 29667 T 432 432
110 Poland 29668 C 432 432
111 Poland 29669 A 432 432
112 Poland 29670 C 432 432
113 Poland 29671 A 431 431
114 Poland 29672 T 431 431
115 Poland 29673 A 431 431
116 Poland 29674 G 431 431