National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Philippines 29558 A 24 24
1 Philippines 29559 T 24 24
2 Philippines 29560 G 24 24
3 Philippines 29561 G 24 24
4 Philippines 29562 G 24 24
5 Philippines 29563 C 24 24
6 Philippines 29564 T 24 24
7 Philippines 29565 A 24 24
8 Philippines 29566 T 24 24
9 Philippines 29567 A 24 24
10 Philippines 29568 T 24 24
11 Philippines 29569 A 24 24
12 Philippines 29570 A 24 24
13 Philippines 29571 A 24 24
14 Philippines 29572 C 24 24
15 Philippines 29573 G 24 24
16 Philippines 29574 T 24 24
17 Philippines 29575 T 24 24
18 Philippines 29576 T 24 24
19 Philippines 29577 T 24 24
20 Philippines 29578 C 24 24
21 Philippines 29579 G 24 24
22 Philippines 29580 C 24 24
23 Philippines 29581 T 24 24
24 Philippines 29582 T 24 24
25 Philippines 29583 T 24 24
26 Philippines 29584 T 24 24
27 Philippines 29585 C 24 24
28 Philippines 29586 C 24 24
29 Philippines 29587 G 24 24
30 Philippines 29588 T 24 24
31 Philippines 29589 T 24 24
32 Philippines 29590 T 24 24
33 Philippines 29591 A 24 24
34 Philippines 29592 C 24 24
35 Philippines 29593 G 24 24
36 Philippines 29594 A 24 24
37 Philippines 29595 T 24 24
38 Philippines 29596 A 24 24
39 Philippines 29597 T 24 24
40 Philippines 29598 A 24 24
41 Philippines 29599 T 24 24
42 Philippines 29600 A 24 24
43 Philippines 29601 G 24 24
44 Philippines 29602 T 24 24
45 Philippines 29603 C 24 24
46 Philippines 29604 T 24 24
47 Philippines 29605 A 24 24
48 Philippines 29606 C 24 24
49 Philippines 29607 T 24 24
50 Philippines 29608 C 24 24
51 Philippines 29609 T 24 24
52 Philippines 29610 T 24 24
53 Philippines 29611 G 24 24
54 Philippines 29612 T 24 24
55 Philippines 29613 G 24 24
56 Philippines 29614 C 24 24
57 Philippines 29615 A 24 24
58 Philippines 29616 G 24 24
59 Philippines 29617 A 24 24
60 Philippines 29618 A 24 24
61 Philippines 29619 T 24 24
62 Philippines 29620 G 24 24
63 Philippines 29621 A 24 24
64 Philippines 29622 A 24 24
65 Philippines 29623 T 24 24
66 Philippines 29624 T 24 24
67 Philippines 29625 C 24 24
68 Philippines 29626 T 24 24
69 Philippines 29627 C 24 24
70 Philippines 29628 G 24 24
71 Philippines 29629 T 24 24
72 Philippines 29630 A 24 24
73 Philippines 29631 A 24 24
74 Philippines 29632 C 24 24
75 Philippines 29633 T 24 24
76 Philippines 29634 A 24 24
77 Philippines 29635 C 24 24
78 Philippines 29636 A 24 24
79 Philippines 29637 T 24 24
80 Philippines 29638 A 24 24
81 Philippines 29639 G 24 24
82 Philippines 29640 C 24 24
83 Philippines 29641 A 24 24
84 Philippines 29642 C 24 24
85 Philippines 29643 A 24 24
86 Philippines 29644 A 24 24
87 Philippines 29645 G 24 24
88 Philippines 29646 T 24 24
89 Philippines 29647 A 24 24
90 Philippines 29648 G 24 24
91 Philippines 29649 A 24 24
92 Philippines 29650 T 24 24
93 Philippines 29651 G 24 24
94 Philippines 29652 T 24 24
95 Philippines 29653 A 24 24
96 Philippines 29654 G 24 24
97 Philippines 29655 T 24 24
98 Philippines 29656 T 24 24
99 Philippines 29657 A 24 24
100 Philippines 29658 A 24 24
101 Philippines 29659 C 24 24
102 Philippines 29660 T 24 24
103 Philippines 29661 T 24 24
104 Philippines 29662 T 24 24
105 Philippines 29663 A 24 24
106 Philippines 29664 A 24 24
107 Philippines 29665 T 24 24
108 Philippines 29666 C 14 14
109 Philippines 29667 T 14 14
110 Philippines 29668 C 14 14
111 Philippines 29669 A 14 14
112 Philippines 29670 C 14 14
113 Philippines 29671 A 14 14
114 Philippines 29672 T 14 14
115 Philippines 29673 A 14 14
116 Philippines 29674 G 14 14