National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G H I L M N P Q R S T V Y
*     2                                  
-     117                                  
?                                        
A     6                           1      
C     3   1   1                          
D     3                                  
F     12                           1      
G     3                                  
H                                        
I     9                               1  
L     12       1   1                      
M     6             1                    
N     16     1       1                    
P     3                                  
Q     3                                  
R     6                                  
S     6       1                          
T     6             1                    
V     12               1                  
Y     9                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Peru 29558 A 527 527
1 Peru 29559 T 527 527
2 Peru 29560 G T 527 525 Met1?
3 Peru 29561 G 527 527
4 Peru 29562 G 527 527
5 Peru 29563 C 527 527
6 Peru 29564 T 527 527
7 Peru 29565 A 527 527
8 Peru 29566 T 527 527
9 Peru 29567 A G 527 526 Ile4Val
10 Peru 29568 T 527 527
11 Peru 29569 A 527 527
12 Peru 29570 A 527 527
13 Peru 29571 A 527 527
14 Peru 29572 C 527 527
15 Peru 29573 G 527 527
16 Peru 29574 T 527 527
17 Peru 29575 T 527 527
18 Peru 29576 T 527 527
19 Peru 29577 T C 527 526 Phe7Ser
20 Peru 29578 C 527 527
21 Peru 29579 G 527 527
22 Peru 29580 C 527 527
23 Peru 29581 T 527 527
24 Peru 29582 T 527 527
25 Peru 29583 T 527 527
26 Peru 29584 T 527 527
27 Peru 29585 C 527 527
28 Peru 29586 C 527 527
29 Peru 29587 G 527 527
30 Peru 29588 T 527 527
31 Peru 29589 T 527 527
32 Peru 29590 T 527 527
33 Peru 29591 A 527 527
34 Peru 29592 C 527 527
35 Peru 29593 G 527 527
36 Peru 29594 A 527 527
37 Peru 29595 T 527 527
38 Peru 29596 A 527 527
39 Peru 29597 T 527 527
40 Peru 29598 A 527 527
41 Peru 29599 T 527 527
42 Peru 29600 A 527 527
43 Peru 29601 G 527 527
44 Peru 29602 T 527 527
45 Peru 29603 C 527 527
46 Peru 29604 T 527 527
47 Peru 29605 A 527 527
48 Peru 29606 C 527 527
49 Peru 29607 T 527 527
50 Peru 29608 C 527 527
51 Peru 29609 T 527 527
52 Peru 29610 T 527 525
53 Peru 29611 G 527 525
54 Peru 29612 T 527 525
55 Peru 29613 G T 527 523 Cys19Phe
56 Peru 29614 C T 527 524 Cys19Cys
57 Peru 29615 A 527 525
58 Peru 29616 G 527 525
59 Peru 29617 A 527 523
60 Peru 29618 A 527 525
61 Peru 29619 T 527 525
62 Peru 29620 G 527 525
63 Peru 29621 A G 527 524 Asn22Asp
64 Peru 29622 A 527 525
65 Peru 29623 T 527 525
66 Peru 29624 T 527 525
67 Peru 29625 C T 527 524 Ser23Phe
68 Peru 29626 T 527 525
69 Peru 29627 C 527 527
70 Peru 29628 G 527 527
71 Peru 29629 T 527 527
72 Peru 29630 A 527 527
73 Peru 29631 A 527 527
74 Peru 29632 C 527 527
75 Peru 29633 T 527 527
76 Peru 29634 A 527 527
77 Peru 29635 C 527 527
78 Peru 29636 A 527 527
79 Peru 29637 T 527 527
80 Peru 29638 A 527 527
81 Peru 29639 G T 527 526 Ala28Ser
82 Peru 29640 C 527 527
83 Peru 29641 A 527 527
84 Peru 29642 C 527 526
85 Peru 29643 A 527 527
86 Peru 29644 A 527 527
87 Peru 29645 G T 527 524 Val30Leu
88 Peru 29646 T 527 527
89 Peru 29647 A 527 527
90 Peru 29648 G 527 527
91 Peru 29649 A 527 527
92 Peru 29650 T 527 527
93 Peru 29651 G 527 527
94 Peru 29652 T 527 527
95 Peru 29653 A 527 527
96 Peru 29654 G 527 527
97 Peru 29655 T 527 527
98 Peru 29656 T 527 527
99 Peru 29657 A 527 527
100 Peru 29658 A T 527 526 Asn34Ile
101 Peru 29659 C 527 527
102 Peru 29660 T 527 527
103 Peru 29661 T 527 527
104 Peru 29662 T 527 527
105 Peru 29663 A 527 527
106 Peru 29664 A 527 527
107 Peru 29665 T 527 527
108 Peru 29666 C T 526 523 Leu37Phe
109 Peru 29667 T A 526 525 Leu37His
110 Peru 29668 C 526 526
111 Peru 29669 A 526 526
112 Peru 29670 C T 526 525 Thr38Ile
113 Peru 29671 A 526 526
114 Peru 29672 T 526 526
115 Peru 29673 A 526 526
116 Peru 29674 G 526 526