National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Panama 29558 A 1 1
1 Panama 29559 T 1 1
2 Panama 29560 G 1 1
3 Panama 29561 G 1 1
4 Panama 29562 G 1 1
5 Panama 29563 C 1 1
6 Panama 29564 T 1 1
7 Panama 29565 A 1 1
8 Panama 29566 T 1 1
9 Panama 29567 A 1 1
10 Panama 29568 T 1 1
11 Panama 29569 A 1 1
12 Panama 29570 A 1 1
13 Panama 29571 A 1 1
14 Panama 29572 C 1 1
15 Panama 29573 G 1 1
16 Panama 29574 T 1 1
17 Panama 29575 T 1 1
18 Panama 29576 T 1 1
19 Panama 29577 T 1 1
20 Panama 29578 C 1 1
21 Panama 29579 G 1 1
22 Panama 29580 C 1 1
23 Panama 29581 T 1 1
24 Panama 29582 T 1 1
25 Panama 29583 T 1 1
26 Panama 29584 T 1 1
27 Panama 29585 C 1 1
28 Panama 29586 C 1 1
29 Panama 29587 G 1 1
30 Panama 29588 T 1 1
31 Panama 29589 T 1 1
32 Panama 29590 T 1 1
33 Panama 29591 A 1 1
34 Panama 29592 C 1 1
35 Panama 29593 G 1 1
36 Panama 29594 A 1 1
37 Panama 29595 T 1 1
38 Panama 29596 A 1 1
39 Panama 29597 T 1 1
40 Panama 29598 A 1 1
41 Panama 29599 T 1 1
42 Panama 29600 A 1 1
43 Panama 29601 G 1 1
44 Panama 29602 T 1 1
45 Panama 29603 C 1 1
46 Panama 29604 T 1 1
47 Panama 29605 A 1 1
48 Panama 29606 C 1 1
49 Panama 29607 T 1 1
50 Panama 29608 C 1 1
51 Panama 29609 T 1 1
52 Panama 29610 T 1 1
53 Panama 29611 G 1 1
54 Panama 29612 T 1 1
55 Panama 29613 G 1 1
56 Panama 29614 C 1 1
57 Panama 29615 A 1 1
58 Panama 29616 G 1 1
59 Panama 29617 A 1 1
60 Panama 29618 A 1 1
61 Panama 29619 T 1 1
62 Panama 29620 G 1 1
63 Panama 29621 A 1 1
64 Panama 29622 A 1 1
65 Panama 29623 T 1 1
66 Panama 29624 T 1 1
67 Panama 29625 C 1 1
68 Panama 29626 T 1 1
69 Panama 29627 C 1 1
70 Panama 29628 G 1 1
71 Panama 29629 T 1 1
72 Panama 29630 A 1 1
73 Panama 29631 A 1 1
74 Panama 29632 C 1 1
75 Panama 29633 T 1 1
76 Panama 29634 A 1 1
77 Panama 29635 C 1 1
78 Panama 29636 A 1 1
79 Panama 29637 T 1 1
80 Panama 29638 A 1 1
81 Panama 29639 G 1 1
82 Panama 29640 C 1 1
83 Panama 29641 A 1 1
84 Panama 29642 C 1 1
85 Panama 29643 A 1 1
86 Panama 29644 A 1 1
87 Panama 29645 G 1 1
88 Panama 29646 T 1 1
89 Panama 29647 A 1 1
90 Panama 29648 G 1 1
91 Panama 29649 A 1 1
92 Panama 29650 T 1 1
93 Panama 29651 G 1 1
94 Panama 29652 T 1 1
95 Panama 29653 A 1 1
96 Panama 29654 G 1 1
97 Panama 29655 T 1 1
98 Panama 29656 T 1 1
99 Panama 29657 A 1 1
100 Panama 29658 A 1 1
101 Panama 29659 C 1 1
102 Panama 29660 T 1 1
103 Panama 29661 T 1 1
104 Panama 29662 T 1 1
105 Panama 29663 A 1 1
106 Panama 29664 A 1 1
107 Panama 29665 T 1 1
108 Panama 29666 C 1 1
109 Panama 29667 T 1 1
110 Panama 29668 C 1 1
111 Panama 29669 A 1 1
112 Panama 29670 C 1 1
113 Panama 29671 A 1 1
114 Panama 29672 T 1 1
115 Panama 29673 A 1 1
116 Panama 29674 G 1 1