National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Palestine 29558 A 79 79
1 Palestine 29559 T 79 79
2 Palestine 29560 G 79 79
3 Palestine 29561 G 79 79
4 Palestine 29562 G 79 79
5 Palestine 29563 C 79 79
6 Palestine 29564 T 79 79
7 Palestine 29565 A 79 79
8 Palestine 29566 T 79 79
9 Palestine 29567 A 79 79
10 Palestine 29568 T 79 79
11 Palestine 29569 A 79 79
12 Palestine 29570 A 79 79
13 Palestine 29571 A 79 79
14 Palestine 29572 C 79 79
15 Palestine 29573 G 79 79
16 Palestine 29574 T 79 79
17 Palestine 29575 T 79 79
18 Palestine 29576 T 79 79
19 Palestine 29577 T 79 79
20 Palestine 29578 C 79 79
21 Palestine 29579 G 79 79
22 Palestine 29580 C 79 79
23 Palestine 29581 T 79 79
24 Palestine 29582 T 79 79
25 Palestine 29583 T 79 79
26 Palestine 29584 T 79 79
27 Palestine 29585 C 79 79
28 Palestine 29586 C 79 79
29 Palestine 29587 G 79 79
30 Palestine 29588 T 79 79
31 Palestine 29589 T 79 79
32 Palestine 29590 T 79 79
33 Palestine 29591 A 79 79
34 Palestine 29592 C 79 79
35 Palestine 29593 G 79 79
36 Palestine 29594 A 79 79
37 Palestine 29595 T 79 79
38 Palestine 29596 A 79 79
39 Palestine 29597 T 79 79
40 Palestine 29598 A 79 79
41 Palestine 29599 T 79 79
42 Palestine 29600 A 79 79
43 Palestine 29601 G 79 79
44 Palestine 29602 T 79 79
45 Palestine 29603 C 79 79
46 Palestine 29604 T 79 79
47 Palestine 29605 A 79 79
48 Palestine 29606 C 79 79
49 Palestine 29607 T 79 79
50 Palestine 29608 C 79 79
51 Palestine 29609 T 79 79
52 Palestine 29610 T 79 79
53 Palestine 29611 G 79 79
54 Palestine 29612 T 79 79
55 Palestine 29613 G 79 79
56 Palestine 29614 C 79 79
57 Palestine 29615 A 79 79
58 Palestine 29616 G 79 79
59 Palestine 29617 A 79 79
60 Palestine 29618 A 79 79
61 Palestine 29619 T 79 79
62 Palestine 29620 G 79 79
63 Palestine 29621 A 79 79
64 Palestine 29622 A 79 79
65 Palestine 29623 T 79 79
66 Palestine 29624 T 79 79
67 Palestine 29625 C 79 79
68 Palestine 29626 T 79 79
69 Palestine 29627 C 79 79
70 Palestine 29628 G 79 79
71 Palestine 29629 T 79 79
72 Palestine 29630 A 79 79
73 Palestine 29631 A 79 79
74 Palestine 29632 C 79 79
75 Palestine 29633 T 79 79
76 Palestine 29634 A 79 79
77 Palestine 29635 C 79 79
78 Palestine 29636 A 79 79
79 Palestine 29637 T 79 79
80 Palestine 29638 A 79 79
81 Palestine 29639 G 79 79
82 Palestine 29640 C 79 79
83 Palestine 29641 A 79 79
84 Palestine 29642 C 79 79
85 Palestine 29643 A 79 79
86 Palestine 29644 A 79 79
87 Palestine 29645 G 79 79
88 Palestine 29646 T 79 79
89 Palestine 29647 A 79 79
90 Palestine 29648 G 79 79
91 Palestine 29649 A 79 79
92 Palestine 29650 T 79 79
93 Palestine 29651 G 79 79
94 Palestine 29652 T 79 79
95 Palestine 29653 A 79 79
96 Palestine 29654 G 79 79
97 Palestine 29655 T 79 79
98 Palestine 29656 T 79 79
99 Palestine 29657 A 79 79
100 Palestine 29658 A 79 79
101 Palestine 29659 C 79 79
102 Palestine 29660 T 79 79
103 Palestine 29661 T 79 79
104 Palestine 29662 T 79 79
105 Palestine 29663 A 79 79
106 Palestine 29664 A 79 79
107 Palestine 29665 T 79 79
108 Palestine 29666 C 79 79
109 Palestine 29667 T 79 79
110 Palestine 29668 C 79 79
111 Palestine 29669 A 79 79
112 Palestine 29670 C 79 79
113 Palestine 29671 A 79 79
114 Palestine 29672 T 79 79
115 Palestine 29673 A 79 79
116 Palestine 29674 G 79 79