National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G H I L M N P Q R S T V Y
*     2                                  
-     117                                  
?                                        
A     6                                  
C     3                                  
D     3                                  
F     12                                  
G     3                                  
H                                        
I     9                                  
L     12                                  
M     6                                  
N     16                                  
P     3                                  
Q     3                                  
R     6           1                      
S     6                                  
T     6                                  
V     12               1                  
Y     9   1                              

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Pakistan 29558 A 51 51
1 Pakistan 29559 T 51 51
2 Pakistan 29560 G 51 51
3 Pakistan 29561 G 51 51
4 Pakistan 29562 G 51 51
5 Pakistan 29563 C 51 51
6 Pakistan 29564 T 51 51
7 Pakistan 29565 A 51 51
8 Pakistan 29566 T 51 51
9 Pakistan 29567 A 51 51
10 Pakistan 29568 T 51 51
11 Pakistan 29569 A 51 51
12 Pakistan 29570 A 51 51
13 Pakistan 29571 A 51 51
14 Pakistan 29572 C 51 51
15 Pakistan 29573 G 51 51
16 Pakistan 29574 T 51 51
17 Pakistan 29575 T 51 51
18 Pakistan 29576 T 51 51
19 Pakistan 29577 T 51 51
20 Pakistan 29578 C 51 51
21 Pakistan 29579 G 51 51
22 Pakistan 29580 C 51 51
23 Pakistan 29581 T 51 51
24 Pakistan 29582 T 51 51
25 Pakistan 29583 T 51 51
26 Pakistan 29584 T 51 51
27 Pakistan 29585 C 51 51
28 Pakistan 29586 C 51 51
29 Pakistan 29587 G 51 51
30 Pakistan 29588 T 51 51
31 Pakistan 29589 T 51 51
32 Pakistan 29590 T 51 51
33 Pakistan 29591 A 51 51
34 Pakistan 29592 C 51 51
35 Pakistan 29593 G 51 51
36 Pakistan 29594 A 51 51
37 Pakistan 29595 T 51 51
38 Pakistan 29596 A 51 51
39 Pakistan 29597 T 51 51
40 Pakistan 29598 A G 51 50 Tyr14Cys
41 Pakistan 29599 T 51 51
42 Pakistan 29600 A 51 51
43 Pakistan 29601 G 51 51
44 Pakistan 29602 T 51 51
45 Pakistan 29603 C 51 51
46 Pakistan 29604 T 51 51
47 Pakistan 29605 A 51 51
48 Pakistan 29606 C 51 51
49 Pakistan 29607 T 51 51
50 Pakistan 29608 C 51 51
51 Pakistan 29609 T 51 51
52 Pakistan 29610 T 51 51
53 Pakistan 29611 G 51 51
54 Pakistan 29612 T 51 51
55 Pakistan 29613 G 51 51
56 Pakistan 29614 C 51 51
57 Pakistan 29615 A 51 51
58 Pakistan 29616 G 51 51
59 Pakistan 29617 A 51 51
60 Pakistan 29618 A 51 51
61 Pakistan 29619 T 51 51
62 Pakistan 29620 G 51 51
63 Pakistan 29621 A 51 51
64 Pakistan 29622 A 51 51
65 Pakistan 29623 T 51 51
66 Pakistan 29624 T 51 51
67 Pakistan 29625 C 51 51
68 Pakistan 29626 T 51 51
69 Pakistan 29627 C 51 51
70 Pakistan 29628 G A 51 50 Arg24His
71 Pakistan 29629 T 51 51
72 Pakistan 29630 A 51 51
73 Pakistan 29631 A 51 51
74 Pakistan 29632 C 51 51
75 Pakistan 29633 T 51 51
76 Pakistan 29634 A 51 51
77 Pakistan 29635 C 51 51
78 Pakistan 29636 A 51 51
79 Pakistan 29637 T 51 51
80 Pakistan 29638 A 51 51
81 Pakistan 29639 G 51 51
82 Pakistan 29640 C 51 51
83 Pakistan 29641 A 51 51
84 Pakistan 29642 C 51 51
85 Pakistan 29643 A 51 51
86 Pakistan 29644 A 51 51
87 Pakistan 29645 G T 51 49 Val30Leu
88 Pakistan 29646 T 51 51
89 Pakistan 29647 A 51 51
90 Pakistan 29648 G 51 51
91 Pakistan 29649 A 51 51
92 Pakistan 29650 T 51 51
93 Pakistan 29651 G 51 51
94 Pakistan 29652 T 51 51
95 Pakistan 29653 A 51 51
96 Pakistan 29654 G 51 51
97 Pakistan 29655 T 51 51
98 Pakistan 29656 T 51 51
99 Pakistan 29657 A 51 51
100 Pakistan 29658 A 51 51
101 Pakistan 29659 C 51 51
102 Pakistan 29660 T 51 51
103 Pakistan 29661 T 51 51
104 Pakistan 29662 T 51 51
105 Pakistan 29663 A 51 51
106 Pakistan 29664 A 51 51
107 Pakistan 29665 T 51 51
108 Pakistan 29666 C 51 51
109 Pakistan 29667 T 51 51
110 Pakistan 29668 C 51 51
111 Pakistan 29669 A 51 51
112 Pakistan 29670 C 51 51
113 Pakistan 29671 A 51 51
114 Pakistan 29672 T 51 51
115 Pakistan 29673 A 51 51
116 Pakistan 29674 G 51 51