National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3   1                            
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                         1      
Q 1   3                                
R     6                                
S     6       1                        
T     6               1                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Norway 29558 A 1276 1276
1 Norway 29559 T 1276 1276
2 Norway 29560 G 1276 1276
3 Norway 29561 G 1276 1276
4 Norway 29562 G 1276 1276
5 Norway 29563 C 1276 1276
6 Norway 29564 T 1276 1276
7 Norway 29565 A 1276 1276
8 Norway 29566 T 1276 1276
9 Norway 29567 A 1276 1276
10 Norway 29568 T 1276 1276
11 Norway 29569 A 1276 1276
12 Norway 29570 A 1276 1276
13 Norway 29571 A 1276 1276
14 Norway 29572 C 1276 1276
15 Norway 29573 G 1276 1276
16 Norway 29574 T 1276 1276
17 Norway 29575 T 1276 1276
18 Norway 29576 T 1276 1276
19 Norway 29577 T 1276 1276
20 Norway 29578 C 1276 1276
21 Norway 29579 G 1276 1276
22 Norway 29580 C 1276 1276
23 Norway 29581 T 1276 1276
24 Norway 29582 T 1276 1276
25 Norway 29583 T 1276 1276
26 Norway 29584 T 1276 1276
27 Norway 29585 C T 1276 1274 Pro10Ser
28 Norway 29586 C 1276 1276
29 Norway 29587 G 1276 1276
30 Norway 29588 T 1276 1276
31 Norway 29589 T 1276 1276
32 Norway 29590 T 1275 1275
33 Norway 29591 A 1275 1275
34 Norway 29592 C T 1275 1274 Thr12Met
35 Norway 29593 G 1275 1275
36 Norway 29594 A 1275 1275
37 Norway 29595 T 1275 1275
38 Norway 29596 A 1275 1275
39 Norway 29597 T 1275 1275
40 Norway 29598 A 1275 1275
41 Norway 29599 T 1275 1275
42 Norway 29600 A 1275 1275
43 Norway 29601 G 1275 1275
44 Norway 29602 T 1275 1275
45 Norway 29603 C 1275 1275
46 Norway 29604 T 1275 1275
47 Norway 29605 A 1275 1275
48 Norway 29606 C 1275 1275
49 Norway 29607 T 1274 1274
50 Norway 29608 C 1274 1274
51 Norway 29609 T 1274 1274
52 Norway 29610 T 1274 1274
53 Norway 29611 G 1274 1274
54 Norway 29612 T 1274 1274
55 Norway 29613 G 1274 1274
56 Norway 29614 C T 1274 1272 Cys19Cys
57 Norway 29615 A 1274 1274
58 Norway 29616 G 1274 1274
59 Norway 29617 A 1274 1274
60 Norway 29618 A 1274 1274
61 Norway 29619 T 1274 1274
62 Norway 29620 G 1274 1274
63 Norway 29621 A 1274 1274
64 Norway 29622 A 1274 1274
65 Norway 29623 T 1274 1274
66 Norway 29624 T 1274 1274
67 Norway 29625 C T 1274 1271 Ser23Phe
68 Norway 29626 T 1274 1274
69 Norway 29627 C 1274 1274
70 Norway 29628 G 1274 1274
71 Norway 29629 T 1274 1274
72 Norway 29630 A 1274 1274
73 Norway 29631 A 1274 1274
74 Norway 29632 C 1274 1274
75 Norway 29633 T 1274 1274
76 Norway 29634 A 1274 1274
77 Norway 29635 C 1274 1274
78 Norway 29636 A 1274 1274
79 Norway 29637 T 1274 1274
80 Norway 29638 A 1274 1274
81 Norway 29639 G 1274 1274
82 Norway 29640 C 1274 1274
83 Norway 29641 A 1274 1274
84 Norway 29642 C T 1274 1273 Gln29*
85 Norway 29643 A 1274 1274
86 Norway 29644 A 1274 1274
87 Norway 29645 G T 1274 1074 Val30Leu
88 Norway 29646 T 1274 1274
89 Norway 29647 A 1274 1274
90 Norway 29648 G 1274 1274
91 Norway 29649 A 1274 1274
92 Norway 29650 T 1274 1274
93 Norway 29651 G 1274 1274
94 Norway 29652 T 1274 1274
95 Norway 29653 A 1274 1274
96 Norway 29654 G 1274 1274
97 Norway 29655 T 1274 1274
98 Norway 29656 T 1274 1274
99 Norway 29657 A 1274 1274
100 Norway 29658 A 1274 1274
101 Norway 29659 C 1274 1274
102 Norway 29660 T 1274 1274
103 Norway 29661 T 1274 1274
104 Norway 29662 T 1274 1274
105 Norway 29663 A 1274 1274
106 Norway 29664 A 1274 1274
107 Norway 29665 T 1274 1274
108 Norway 29666 C 1258 1258
109 Norway 29667 T 1258 1258
110 Norway 29668 C 1258 1258
111 Norway 29669 A 1258 1258
112 Norway 29670 C 1258 1258
113 Norway 29671 A 1258 1258
114 Norway 29672 T 1258 1258
115 Norway 29673 A 1258 1258
116 Norway 29674 G 1258 1258