National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                           1    
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 North_Macedonia 29558 A 82 82
1 North_Macedonia 29559 T 82 82
2 North_Macedonia 29560 G 82 82
3 North_Macedonia 29561 G 82 82
4 North_Macedonia 29562 G 82 82
5 North_Macedonia 29563 C 82 82
6 North_Macedonia 29564 T 82 82
7 North_Macedonia 29565 A 82 82
8 North_Macedonia 29566 T 82 82
9 North_Macedonia 29567 A 82 82
10 North_Macedonia 29568 T 82 82
11 North_Macedonia 29569 A 82 82
12 North_Macedonia 29570 A 82 82
13 North_Macedonia 29571 A 82 82
14 North_Macedonia 29572 C 82 82
15 North_Macedonia 29573 G 82 82
16 North_Macedonia 29574 T 82 82
17 North_Macedonia 29575 T 82 82
18 North_Macedonia 29576 T 82 82
19 North_Macedonia 29577 T 82 82
20 North_Macedonia 29578 C 82 82
21 North_Macedonia 29579 G 82 82
22 North_Macedonia 29580 C 82 82
23 North_Macedonia 29581 T 82 82
24 North_Macedonia 29582 T 82 82
25 North_Macedonia 29583 T 82 82
26 North_Macedonia 29584 T 82 82
27 North_Macedonia 29585 C 82 82
28 North_Macedonia 29586 C 82 82
29 North_Macedonia 29587 G 82 82
30 North_Macedonia 29588 T 82 82
31 North_Macedonia 29589 T 82 82
32 North_Macedonia 29590 T 82 82
33 North_Macedonia 29591 A 82 82
34 North_Macedonia 29592 C 82 82
35 North_Macedonia 29593 G A 82 81 Thr12Thr
36 North_Macedonia 29594 A 82 82
37 North_Macedonia 29595 T 82 82
38 North_Macedonia 29596 A 82 82
39 North_Macedonia 29597 T 82 82
40 North_Macedonia 29598 A 82 82
41 North_Macedonia 29599 T 82 82
42 North_Macedonia 29600 A 82 82
43 North_Macedonia 29601 G 82 82
44 North_Macedonia 29602 T 82 82
45 North_Macedonia 29603 C 82 82
46 North_Macedonia 29604 T 82 82
47 North_Macedonia 29605 A 82 82
48 North_Macedonia 29606 C 82 82
49 North_Macedonia 29607 T 82 82
50 North_Macedonia 29608 C 82 82
51 North_Macedonia 29609 T 82 82
52 North_Macedonia 29610 T 82 82
53 North_Macedonia 29611 G 82 82
54 North_Macedonia 29612 T 82 82
55 North_Macedonia 29613 G 82 82
56 North_Macedonia 29614 C 82 82
57 North_Macedonia 29615 A 82 82
58 North_Macedonia 29616 G 82 82
59 North_Macedonia 29617 A 82 82
60 North_Macedonia 29618 A 82 82
61 North_Macedonia 29619 T 82 82
62 North_Macedonia 29620 G 82 82
63 North_Macedonia 29621 A 82 82
64 North_Macedonia 29622 A 82 82
65 North_Macedonia 29623 T 82 82
66 North_Macedonia 29624 T 82 82
67 North_Macedonia 29625 C 82 82
68 North_Macedonia 29626 T 82 82
69 North_Macedonia 29627 C 82 82
70 North_Macedonia 29628 G 82 82
71 North_Macedonia 29629 T 82 82
72 North_Macedonia 29630 A 82 82
73 North_Macedonia 29631 A 82 82
74 North_Macedonia 29632 C 82 82
75 North_Macedonia 29633 T 82 82
76 North_Macedonia 29634 A 82 82
77 North_Macedonia 29635 C 82 82
78 North_Macedonia 29636 A 82 82
79 North_Macedonia 29637 T 82 82
80 North_Macedonia 29638 A 82 82
81 North_Macedonia 29639 G 82 82
82 North_Macedonia 29640 C 82 82
83 North_Macedonia 29641 A 82 82
84 North_Macedonia 29642 C 82 82
85 North_Macedonia 29643 A 82 82
86 North_Macedonia 29644 A 82 82
87 North_Macedonia 29645 G 82 82
88 North_Macedonia 29646 T 82 82
89 North_Macedonia 29647 A 82 82
90 North_Macedonia 29648 G 82 82
91 North_Macedonia 29649 A 82 82
92 North_Macedonia 29650 T 82 82
93 North_Macedonia 29651 G 82 82
94 North_Macedonia 29652 T 82 82
95 North_Macedonia 29653 A 82 82
96 North_Macedonia 29654 G 82 82
97 North_Macedonia 29655 T 82 82
98 North_Macedonia 29656 T 82 82
99 North_Macedonia 29657 A 82 82
100 North_Macedonia 29658 A 82 82
101 North_Macedonia 29659 C 82 82
102 North_Macedonia 29660 T 82 82
103 North_Macedonia 29661 T 82 82
104 North_Macedonia 29662 T 82 82
105 North_Macedonia 29663 A 82 82
106 North_Macedonia 29664 A 82 82
107 North_Macedonia 29665 T 82 82
108 North_Macedonia 29666 C 82 82
109 North_Macedonia 29667 T 82 82
110 North_Macedonia 29668 C 82 82
111 North_Macedonia 29669 A 82 82
112 North_Macedonia 29670 C 82 82
113 North_Macedonia 29671 A 82 82
114 North_Macedonia 29672 T 82 82
115 North_Macedonia 29673 A 82 82
116 North_Macedonia 29674 G 82 82