National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3   1                            
D     3                                
F     12                                
G     3                                
I     9                           1    
L     12                                
M     6                                
N     16                                
P     3                                
Q 1   3                                
R     6           1                    
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Nigeria 29558 A 250 250
1 Nigeria 29559 T 250 250
2 Nigeria 29560 G 250 250
3 Nigeria 29561 G 250 250
4 Nigeria 29562 G 250 250
5 Nigeria 29563 C 251 251
6 Nigeria 29564 T 251 251
7 Nigeria 29565 A 252 252
8 Nigeria 29566 T 252 252
9 Nigeria 29567 A 252 252
10 Nigeria 29568 T C 252 243 Ile4Thr
11 Nigeria 29569 A 252 252
12 Nigeria 29570 A 252 252
13 Nigeria 29571 A 252 252
14 Nigeria 29572 C 252 252
15 Nigeria 29573 G 252 252
16 Nigeria 29574 T 252 252
17 Nigeria 29575 T 252 252
18 Nigeria 29576 T 252 252
19 Nigeria 29577 T 252 252
20 Nigeria 29578 C 252 252
21 Nigeria 29579 G 252 252
22 Nigeria 29580 C 252 252
23 Nigeria 29581 T 252 252
24 Nigeria 29582 T 252 252
25 Nigeria 29583 T 252 252
26 Nigeria 29584 T 252 252
27 Nigeria 29585 C 252 252
28 Nigeria 29586 C 253 253
29 Nigeria 29587 G 253 253
30 Nigeria 29588 T 253 253
31 Nigeria 29589 T 253 253
32 Nigeria 29590 T 253 253
33 Nigeria 29591 A 253 253
34 Nigeria 29592 C 253 253
35 Nigeria 29593 G 253 252
36 Nigeria 29594 A 253 252
37 Nigeria 29595 T 254 254
38 Nigeria 29596 A 254 254
39 Nigeria 29597 T 254 254
40 Nigeria 29598 A 254 254
41 Nigeria 29599 T 254 254
42 Nigeria 29600 A 254 254
43 Nigeria 29601 G 254 254
44 Nigeria 29602 T 254 254
45 Nigeria 29603 C 254 254
46 Nigeria 29604 T 254 254
47 Nigeria 29605 A 254 254
48 Nigeria 29606 C 254 254
49 Nigeria 29607 T 254 254
50 Nigeria 29608 C 254 254
51 Nigeria 29609 T 254 254
52 Nigeria 29610 T 254 254
53 Nigeria 29611 G 254 254
54 Nigeria 29612 T 254 254
55 Nigeria 29613 G 254 254
56 Nigeria 29614 C T 254 253 Cys19Cys
57 Nigeria 29615 A 254 254
58 Nigeria 29616 G T 254 253 Arg20Ile
59 Nigeria 29617 A 254 254
60 Nigeria 29618 A 254 254
61 Nigeria 29619 T 254 254
62 Nigeria 29620 G 254 254
63 Nigeria 29621 A 254 254
64 Nigeria 29622 A 254 254
65 Nigeria 29623 T 254 253
66 Nigeria 29624 T 254 254
67 Nigeria 29625 C 254 254
68 Nigeria 29626 T 254 254
69 Nigeria 29627 C 254 254
70 Nigeria 29628 G 254 254
71 Nigeria 29629 T 254 254
72 Nigeria 29630 A 254 254
73 Nigeria 29631 A 254 254
74 Nigeria 29632 C 254 254
75 Nigeria 29633 T 254 254
76 Nigeria 29634 A 254 254
77 Nigeria 29635 C 254 254
78 Nigeria 29636 A 254 254
79 Nigeria 29637 T 254 254
80 Nigeria 29638 A 254 254
81 Nigeria 29639 G 254 254
82 Nigeria 29640 C 253 253
83 Nigeria 29641 A 253 253
84 Nigeria 29642 C T 253 252 Gln29*
85 Nigeria 29643 A 253 253
86 Nigeria 29644 A 253 253
87 Nigeria 29645 G T 253 251 Val30Leu
88 Nigeria 29646 T 253 253
89 Nigeria 29647 A 253 253
90 Nigeria 29648 G 253 253
91 Nigeria 29649 A 253 253
92 Nigeria 29650 T 253 253
93 Nigeria 29651 G 253 253
94 Nigeria 29652 T 253 253
95 Nigeria 29653 A 253 253
96 Nigeria 29654 G 253 253
97 Nigeria 29655 T 253 253
98 Nigeria 29656 T 253 253
99 Nigeria 29657 A 253 253
100 Nigeria 29658 A 253 253
101 Nigeria 29659 C 253 253
102 Nigeria 29660 T 253 253
103 Nigeria 29661 T 253 253
104 Nigeria 29662 T 253 253
105 Nigeria 29663 A 253 253
106 Nigeria 29664 A 253 253
107 Nigeria 29665 T 253 253
108 Nigeria 29666 C 250 250
109 Nigeria 29667 T 250 250
110 Nigeria 29668 C 250 250
111 Nigeria 29669 A 250 250
112 Nigeria 29670 C 250 250
113 Nigeria 29671 A 250 250
114 Nigeria 29672 T 250 250
115 Nigeria 29673 A 249 249
116 Nigeria 29674 G 249 249