National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             1  
C     3   1                            
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3             1                  
Q     3                                
R     6   1                            
S     6                                
T     6                                
V     12 1           1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 New_Zealand 29558 A 1103 1103
1 New_Zealand 29559 T 1103 1103
2 New_Zealand 29560 G 1105 1105
3 New_Zealand 29561 G 1105 1105
4 New_Zealand 29562 G 1105 1105
5 New_Zealand 29563 C 1105 1105
6 New_Zealand 29564 T 1105 1105
7 New_Zealand 29565 A 1105 1105
8 New_Zealand 29566 T 1105 1105
9 New_Zealand 29567 A 1105 1105
10 New_Zealand 29568 T 1105 1105
11 New_Zealand 29569 A 1105 1105
12 New_Zealand 29570 A 1105 1105
13 New_Zealand 29571 A 1105 1105
14 New_Zealand 29572 C 1105 1105
15 New_Zealand 29573 G 1105 1105
16 New_Zealand 29574 T 1105 1105
17 New_Zealand 29575 T 1105 1105
18 New_Zealand 29576 T 1105 1105
19 New_Zealand 29577 T 1105 1105
20 New_Zealand 29578 C 1105 1105
21 New_Zealand 29579 G 1105 1105
22 New_Zealand 29580 C 1105 1104
23 New_Zealand 29581 T 1105 1105
24 New_Zealand 29582 T 1105 1105
25 New_Zealand 29583 T 1105 1105
26 New_Zealand 29584 T 1105 1105
27 New_Zealand 29585 C 1105 1105
28 New_Zealand 29586 C T 1105 1104 Pro10Leu
29 New_Zealand 29587 G 1105 1105
30 New_Zealand 29588 T 1105 1105
31 New_Zealand 29589 T 1105 1105
32 New_Zealand 29590 T 1105 1105
33 New_Zealand 29591 A 1105 1105
34 New_Zealand 29592 C 1105 1105
35 New_Zealand 29593 G 1105 1105
36 New_Zealand 29594 A 1105 1105
37 New_Zealand 29595 T 1105 1105
38 New_Zealand 29596 A 1105 1105
39 New_Zealand 29597 T 1105 1105
40 New_Zealand 29598 A 1105 1105
41 New_Zealand 29599 T 1105 1105
42 New_Zealand 29600 A 1105 1105
43 New_Zealand 29601 G 1105 1105
44 New_Zealand 29602 T 1105 1105
45 New_Zealand 29603 C 1105 1105
46 New_Zealand 29604 T 1105 1105
47 New_Zealand 29605 A 1105 1105
48 New_Zealand 29606 C 1105 1105
49 New_Zealand 29607 T 1105 1105
50 New_Zealand 29608 C 1105 1105
51 New_Zealand 29609 T 1105 1105
52 New_Zealand 29610 T 1105 1105
53 New_Zealand 29611 G 1105 1105
54 New_Zealand 29612 T 1105 1105
55 New_Zealand 29613 G 1105 1105
56 New_Zealand 29614 C T 1105 1103 Cys19Cys
57 New_Zealand 29615 A 1104 1103
58 New_Zealand 29616 G 1104 1103
59 New_Zealand 29617 A 1104 1104
60 New_Zealand 29618 A 1104 1104
61 New_Zealand 29619 T 1104 1104
62 New_Zealand 29620 G 1104 1104
63 New_Zealand 29621 A 1104 1104
64 New_Zealand 29622 A 1104 1104
65 New_Zealand 29623 T 1104 1104
66 New_Zealand 29624 T 1104 1104
67 New_Zealand 29625 C 1104 1104
68 New_Zealand 29626 T 1104 1104
69 New_Zealand 29627 C T 1104 1103 Arg24Cys
70 New_Zealand 29628 G 1104 1104
71 New_Zealand 29629 T 1104 1104
72 New_Zealand 29630 A 1104 1104
73 New_Zealand 29631 A 1104 1104
74 New_Zealand 29632 C 1104 1104
75 New_Zealand 29633 T 1104 1104
76 New_Zealand 29634 A 1104 1104
77 New_Zealand 29635 C 1104 1104
78 New_Zealand 29636 A 1104 1104
79 New_Zealand 29637 T 1104 1104
80 New_Zealand 29638 A 1104 1104
81 New_Zealand 29639 G 1104 1104
82 New_Zealand 29640 C T 1104 1102 Ala28Val
83 New_Zealand 29641 A 1104 1104
84 New_Zealand 29642 C 1104 1104
85 New_Zealand 29643 A 1104 1104
86 New_Zealand 29644 A 1104 1104
87 New_Zealand 29645 G T 1104 1065 Val30Leu
88 New_Zealand 29646 T 1104 1104
89 New_Zealand 29647 A 1104 1104
90 New_Zealand 29648 G 1104 1104
91 New_Zealand 29649 A 1104 1104
92 New_Zealand 29650 T 1104 1104
93 New_Zealand 29651 G 1104 1104
94 New_Zealand 29652 T C 1104 1101 Val32Ala
95 New_Zealand 29653 A 1104 1104
96 New_Zealand 29654 G 1104 1104
97 New_Zealand 29655 T 1104 1104
98 New_Zealand 29656 T 1104 1104
99 New_Zealand 29657 A 1104 1104
100 New_Zealand 29658 A 1104 1104
101 New_Zealand 29659 C 1104 1104
102 New_Zealand 29660 T 1104 1104
103 New_Zealand 29661 T 1104 1104
104 New_Zealand 29662 T 1104 1104
105 New_Zealand 29663 A 1104 1104
106 New_Zealand 29664 A 1104 1104
107 New_Zealand 29665 T 1103 1103
108 New_Zealand 29666 C 1094 1094
109 New_Zealand 29667 T 1094 1094
110 New_Zealand 29668 C 1094 1094
111 New_Zealand 29669 A 1094 1094
112 New_Zealand 29670 C 1094 1094
113 New_Zealand 29671 A 1094 1094
114 New_Zealand 29672 T 1094 1094
115 New_Zealand 29673 A 1094 1094
116 New_Zealand 29674 G 1092 1092