National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Nepal 29558 A 3 3
1 Nepal 29559 T 3 3
2 Nepal 29560 G 3 3
3 Nepal 29561 G 3 3
4 Nepal 29562 G 3 3
5 Nepal 29563 C 3 3
6 Nepal 29564 T 3 3
7 Nepal 29565 A 3 3
8 Nepal 29566 T 3 3
9 Nepal 29567 A 3 3
10 Nepal 29568 T 3 3
11 Nepal 29569 A 3 3
12 Nepal 29570 A 3 3
13 Nepal 29571 A 3 3
14 Nepal 29572 C 3 3
15 Nepal 29573 G 3 3
16 Nepal 29574 T 3 3
17 Nepal 29575 T 3 3
18 Nepal 29576 T 3 3
19 Nepal 29577 T 3 3
20 Nepal 29578 C 3 3
21 Nepal 29579 G 3 3
22 Nepal 29580 C 3 3
23 Nepal 29581 T 3 3
24 Nepal 29582 T 3 3
25 Nepal 29583 T 3 3
26 Nepal 29584 T 3 3
27 Nepal 29585 C 3 3
28 Nepal 29586 C 3 3
29 Nepal 29587 G 3 3
30 Nepal 29588 T 3 3
31 Nepal 29589 T 3 3
32 Nepal 29590 T 3 3
33 Nepal 29591 A 3 3
34 Nepal 29592 C 3 3
35 Nepal 29593 G 3 3
36 Nepal 29594 A 4 4
37 Nepal 29595 T 4 4
38 Nepal 29596 A 4 4
39 Nepal 29597 T 4 4
40 Nepal 29598 A 4 4
41 Nepal 29599 T 4 4
42 Nepal 29600 A 3 3
43 Nepal 29601 G 3 3
44 Nepal 29602 T 3 3
45 Nepal 29603 C 3 3
46 Nepal 29604 T 3 3
47 Nepal 29605 A 3 3
48 Nepal 29606 C 3 3
49 Nepal 29607 T 3 3
50 Nepal 29608 C 3 3
51 Nepal 29609 T 3 3
52 Nepal 29610 T 3 3
53 Nepal 29611 G 3 3
54 Nepal 29612 T 3 3
55 Nepal 29613 G 3 3
56 Nepal 29614 C 3 3
57 Nepal 29615 A 3 3
58 Nepal 29616 G 3 3
59 Nepal 29617 A 3 3
60 Nepal 29618 A 3 3
61 Nepal 29619 T 3 3
62 Nepal 29620 G 3 3
63 Nepal 29621 A 3 3
64 Nepal 29622 A 3 3
65 Nepal 29623 T 3 3
66 Nepal 29624 T 3 3
67 Nepal 29625 C 3 3
68 Nepal 29626 T 3 3
69 Nepal 29627 C 3 3
70 Nepal 29628 G 3 3
71 Nepal 29629 T 3 3
72 Nepal 29630 A 3 3
73 Nepal 29631 A 3 3
74 Nepal 29632 C 3 3
75 Nepal 29633 T 3 3
76 Nepal 29634 A 3 3
77 Nepal 29635 C 3 3
78 Nepal 29636 A 3 3
79 Nepal 29637 T 3 3
80 Nepal 29638 A 3 3
81 Nepal 29639 G 3 3
82 Nepal 29640 C 3 3
83 Nepal 29641 A 3 3
84 Nepal 29642 C 3 3
85 Nepal 29643 A 3 3
86 Nepal 29644 A 3 3
87 Nepal 29645 G 3 3
88 Nepal 29646 T 3 3
89 Nepal 29647 A 3 3
90 Nepal 29648 G 3 3
91 Nepal 29649 A 3 3
92 Nepal 29650 T 3 3
93 Nepal 29651 G 3 3
94 Nepal 29652 T 3 3
95 Nepal 29653 A 2 2
96 Nepal 29654 G 2 2
97 Nepal 29655 T 2 2
98 Nepal 29656 T 2 2
99 Nepal 29657 A 2 2
100 Nepal 29658 A 2 2
101 Nepal 29659 C 2 2
102 Nepal 29660 T 2 2
103 Nepal 29661 T 2 2
104 Nepal 29662 T 2 2
105 Nepal 29663 A 2 2
106 Nepal 29664 A 2 2
107 Nepal 29665 T 2 2
108 Nepal 29666 C 2 2
109 Nepal 29667 T 2 2
110 Nepal 29668 C 2 2
111 Nepal 29669 A 1 1
112 Nepal 29670 C 1 1
113 Nepal 29671 A 1 1
114 Nepal 29672 T 1 1
115 Nepal 29673 A 1 1
116 Nepal 29674 G 1 1