National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Myanmar 29558 A 41 41
1 Myanmar 29559 T 41 41
2 Myanmar 29560 G 41 41
3 Myanmar 29561 G 41 41
4 Myanmar 29562 G 41 41
5 Myanmar 29563 C 41 41
6 Myanmar 29564 T 41 41
7 Myanmar 29565 A 41 41
8 Myanmar 29566 T 41 41
9 Myanmar 29567 A 41 41
10 Myanmar 29568 T 41 41
11 Myanmar 29569 A 41 41
12 Myanmar 29570 A 41 41
13 Myanmar 29571 A 41 41
14 Myanmar 29572 C 41 41
15 Myanmar 29573 G 41 41
16 Myanmar 29574 T 41 41
17 Myanmar 29575 T 41 41
18 Myanmar 29576 T 41 41
19 Myanmar 29577 T 41 41
20 Myanmar 29578 C 41 41
21 Myanmar 29579 G 41 41
22 Myanmar 29580 C 41 41
23 Myanmar 29581 T 41 41
24 Myanmar 29582 T 41 41
25 Myanmar 29583 T 41 41
26 Myanmar 29584 T 41 41
27 Myanmar 29585 C 41 41
28 Myanmar 29586 C 41 41
29 Myanmar 29587 G 41 41
30 Myanmar 29588 T 41 41
31 Myanmar 29589 T 41 41
32 Myanmar 29590 T 41 41
33 Myanmar 29591 A 41 41
34 Myanmar 29592 C 41 41
35 Myanmar 29593 G 41 41
36 Myanmar 29594 A 41 41
37 Myanmar 29595 T 41 41
38 Myanmar 29596 A 41 41
39 Myanmar 29597 T 41 41
40 Myanmar 29598 A 41 41
41 Myanmar 29599 T 41 41
42 Myanmar 29600 A 41 41
43 Myanmar 29601 G 41 41
44 Myanmar 29602 T 41 41
45 Myanmar 29603 C 41 41
46 Myanmar 29604 T 41 41
47 Myanmar 29605 A 41 41
48 Myanmar 29606 C 41 41
49 Myanmar 29607 T 41 41
50 Myanmar 29608 C 41 41
51 Myanmar 29609 T 41 41
52 Myanmar 29610 T 41 41
53 Myanmar 29611 G 41 41
54 Myanmar 29612 T 41 41
55 Myanmar 29613 G 41 41
56 Myanmar 29614 C 41 41
57 Myanmar 29615 A 41 41
58 Myanmar 29616 G 41 41
59 Myanmar 29617 A 41 41
60 Myanmar 29618 A 41 41
61 Myanmar 29619 T 41 41
62 Myanmar 29620 G 41 41
63 Myanmar 29621 A 41 41
64 Myanmar 29622 A 41 41
65 Myanmar 29623 T 41 41
66 Myanmar 29624 T 41 41
67 Myanmar 29625 C 41 41
68 Myanmar 29626 T 41 41
69 Myanmar 29627 C 41 41
70 Myanmar 29628 G 41 41
71 Myanmar 29629 T 41 41
72 Myanmar 29630 A 41 41
73 Myanmar 29631 A 41 41
74 Myanmar 29632 C 41 41
75 Myanmar 29633 T 41 41
76 Myanmar 29634 A 41 41
77 Myanmar 29635 C 41 41
78 Myanmar 29636 A 41 41
79 Myanmar 29637 T 41 41
80 Myanmar 29638 A 41 41
81 Myanmar 29639 G 41 41
82 Myanmar 29640 C 41 41
83 Myanmar 29641 A 41 41
84 Myanmar 29642 C 41 41
85 Myanmar 29643 A 41 41
86 Myanmar 29644 A 41 41
87 Myanmar 29645 G 41 41
88 Myanmar 29646 T 41 41
89 Myanmar 29647 A 41 41
90 Myanmar 29648 G 41 41
91 Myanmar 29649 A 41 41
92 Myanmar 29650 T 41 41
93 Myanmar 29651 G 41 41
94 Myanmar 29652 T 41 41
95 Myanmar 29653 A 41 41
96 Myanmar 29654 G 41 41
97 Myanmar 29655 T 41 41
98 Myanmar 29656 T 41 41
99 Myanmar 29657 A 41 41
100 Myanmar 29658 A 41 41
101 Myanmar 29659 C 41 41
102 Myanmar 29660 T 41 41
103 Myanmar 29661 T 41 41
104 Myanmar 29662 T 41 41
105 Myanmar 29663 A 41 41
106 Myanmar 29664 A 41 41
107 Myanmar 29665 T 41 41
108 Myanmar 29666 C 41 41
109 Myanmar 29667 T 41 41
110 Myanmar 29668 C 41 41
111 Myanmar 29669 A 41 41
112 Myanmar 29670 C 41 41
113 Myanmar 29671 A 41 41
114 Myanmar 29672 T 41 41
115 Myanmar 29673 A 41 41
116 Myanmar 29674 G 41 41