National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3   1                            
I     9                             1  
L     12                                
M     6                                
N     16                               1
P     3                                
Q     3                                
R     6                                
S     6       1                        
T     6                                
V     12                                
Y     9                               1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mozambique 29558 A 93 93
1 Mozambique 29559 T 93 93
2 Mozambique 29560 G 93 93
3 Mozambique 29561 G T 93 92 Gly2Cys
4 Mozambique 29562 G 93 93
5 Mozambique 29563 C 93 93
6 Mozambique 29564 T 93 93
7 Mozambique 29565 A 94 94
8 Mozambique 29566 T 94 94
9 Mozambique 29567 A 94 94
10 Mozambique 29568 T 94 94
11 Mozambique 29569 A 94 94
12 Mozambique 29570 A 94 94
13 Mozambique 29571 A 94 94
14 Mozambique 29572 C 94 94
15 Mozambique 29573 G 94 94
16 Mozambique 29574 T 94 94
17 Mozambique 29575 T 94 94
18 Mozambique 29576 T 94 94
19 Mozambique 29577 T 94 94
20 Mozambique 29578 C 94 94
21 Mozambique 29579 G 94 94
22 Mozambique 29580 C 94 94
23 Mozambique 29581 T 94 94
24 Mozambique 29582 T 94 94
25 Mozambique 29583 T 94 94
26 Mozambique 29584 T 94 94
27 Mozambique 29585 C 94 94
28 Mozambique 29586 C 94 94
29 Mozambique 29587 G 94 94
30 Mozambique 29588 T 94 94
31 Mozambique 29589 T 94 94
32 Mozambique 29590 T 94 94
33 Mozambique 29591 A 94 94
34 Mozambique 29592 C 94 94
35 Mozambique 29593 G 94 94
36 Mozambique 29594 A 94 94
37 Mozambique 29595 T 94 94
38 Mozambique 29596 A 94 94
39 Mozambique 29597 T 94 94
40 Mozambique 29598 A 94 94
41 Mozambique 29599 T 94 94
42 Mozambique 29600 A 94 94
43 Mozambique 29601 G 94 94
44 Mozambique 29602 T 94 94
45 Mozambique 29603 C 94 94
46 Mozambique 29604 T 94 94
47 Mozambique 29605 A 94 94
48 Mozambique 29606 C 94 94
49 Mozambique 29607 T 94 94
50 Mozambique 29608 C 94 94
51 Mozambique 29609 T 94 94
52 Mozambique 29610 T 94 94
53 Mozambique 29611 G 94 94
54 Mozambique 29612 T 94 94
55 Mozambique 29613 G 94 94
56 Mozambique 29614 C 94 94
57 Mozambique 29615 A 94 94
58 Mozambique 29616 G 94 94
59 Mozambique 29617 A 94 94
60 Mozambique 29618 A 94 94
61 Mozambique 29619 T 94 94
62 Mozambique 29620 G 94 94
63 Mozambique 29621 A T 94 90 Asn22Tyr
64 Mozambique 29622 A 94 94
65 Mozambique 29623 T 94 94
66 Mozambique 29624 T 94 94
67 Mozambique 29625 C T 94 93 Ser23Phe
68 Mozambique 29626 T 94 94
69 Mozambique 29627 C 94 94
70 Mozambique 29628 G 94 94
71 Mozambique 29629 T 94 94
72 Mozambique 29630 A 94 94
73 Mozambique 29631 A 94 94
74 Mozambique 29632 C 94 94
75 Mozambique 29633 T 94 94
76 Mozambique 29634 A 94 94
77 Mozambique 29635 C T 94 93 Tyr26Tyr
78 Mozambique 29636 A G 94 91 Ile27Val
79 Mozambique 29637 T 94 94
80 Mozambique 29638 A 94 94
81 Mozambique 29639 G 94 94
82 Mozambique 29640 C 94 94
83 Mozambique 29641 A 94 94
84 Mozambique 29642 C 94 94
85 Mozambique 29643 A 94 94
86 Mozambique 29644 A 94 94
87 Mozambique 29645 G 94 94
88 Mozambique 29646 T 94 94
89 Mozambique 29647 A 94 94
90 Mozambique 29648 G 94 94
91 Mozambique 29649 A 94 94
92 Mozambique 29650 T 94 94
93 Mozambique 29651 G 94 94
94 Mozambique 29652 T 94 94
95 Mozambique 29653 A 94 94
96 Mozambique 29654 G 94 94
97 Mozambique 29655 T 94 94
98 Mozambique 29656 T 94 94
99 Mozambique 29657 A 94 94
100 Mozambique 29658 A 94 94
101 Mozambique 29659 C 94 94
102 Mozambique 29660 T 94 94
103 Mozambique 29661 T 94 94
104 Mozambique 29662 T 94 94
105 Mozambique 29663 A 94 94
106 Mozambique 29664 A 94 94
107 Mozambique 29665 T 94 94
108 Mozambique 29666 C 94 94
109 Mozambique 29667 T 94 94
110 Mozambique 29668 C 94 94
111 Mozambique 29669 A 94 94
112 Mozambique 29670 C 94 94
113 Mozambique 29671 A 94 94
114 Mozambique 29672 T 94 94
115 Mozambique 29673 A 93 93
116 Mozambique 29674 G 93 93