National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                               1
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                               1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Morocco 29558 A 117 117
1 Morocco 29559 T 117 117
2 Morocco 29560 G 117 117
3 Morocco 29561 G 117 117
4 Morocco 29562 G 117 117
5 Morocco 29563 C 117 117
6 Morocco 29564 T 117 117
7 Morocco 29565 A 117 117
8 Morocco 29566 T 117 117
9 Morocco 29567 A 117 117
10 Morocco 29568 T 117 117
11 Morocco 29569 A 117 117
12 Morocco 29570 A 117 117
13 Morocco 29571 A 117 117
14 Morocco 29572 C 117 117
15 Morocco 29573 G 117 117
16 Morocco 29574 T 117 117
17 Morocco 29575 T 117 117
18 Morocco 29576 T 117 117
19 Morocco 29577 T 117 117
20 Morocco 29578 C 117 117
21 Morocco 29579 G 117 117
22 Morocco 29580 C 117 117
23 Morocco 29581 T 117 117
24 Morocco 29582 T 117 117
25 Morocco 29583 T 117 117
26 Morocco 29584 T 117 117
27 Morocco 29585 C 117 117
28 Morocco 29586 C 117 117
29 Morocco 29587 G 117 117
30 Morocco 29588 T 117 117
31 Morocco 29589 T 117 117
32 Morocco 29590 T 117 117
33 Morocco 29591 A 117 117
34 Morocco 29592 C 117 117
35 Morocco 29593 G 117 117
36 Morocco 29594 A 117 117
37 Morocco 29595 T 117 117
38 Morocco 29596 A 117 117
39 Morocco 29597 T 117 117
40 Morocco 29598 A 117 117
41 Morocco 29599 T C 117 111 Tyr14Tyr
42 Morocco 29600 A 117 117
43 Morocco 29601 G 117 117
44 Morocco 29602 T 117 117
45 Morocco 29603 C 117 117
46 Morocco 29604 T 117 117
47 Morocco 29605 A 117 117
48 Morocco 29606 C 117 117
49 Morocco 29607 T 117 117
50 Morocco 29608 C 117 117
51 Morocco 29609 T 117 117
52 Morocco 29610 T 117 117
53 Morocco 29611 G 117 117
54 Morocco 29612 T 117 117
55 Morocco 29613 G 117 117
56 Morocco 29614 C 117 117
57 Morocco 29615 A 117 117
58 Morocco 29616 G 117 117
59 Morocco 29617 A 117 117
60 Morocco 29618 A 118 118
61 Morocco 29619 T 118 118
62 Morocco 29620 G 118 118
63 Morocco 29621 A 118 118
64 Morocco 29622 A 118 118
65 Morocco 29623 T 118 118
66 Morocco 29624 T 118 118
67 Morocco 29625 C 118 118
68 Morocco 29626 T 118 118
69 Morocco 29627 C 118 118
70 Morocco 29628 G 118 118
71 Morocco 29629 T 118 118
72 Morocco 29630 A 118 118
73 Morocco 29631 A 118 118
74 Morocco 29632 C 118 118
75 Morocco 29633 T 118 118
76 Morocco 29634 A 118 118
77 Morocco 29635 C 118 118
78 Morocco 29636 A 118 118
79 Morocco 29637 T 118 118
80 Morocco 29638 A 118 118
81 Morocco 29639 G 118 118
82 Morocco 29640 C 118 118
83 Morocco 29641 A 117 117
84 Morocco 29642 C 117 117
85 Morocco 29643 A 117 117
86 Morocco 29644 A 117 117
87 Morocco 29645 G T 117 113 Val30Leu
88 Morocco 29646 T 117 117
89 Morocco 29647 A 117 117
90 Morocco 29648 G T 117 116 Asp31Tyr
91 Morocco 29649 A 117 117
92 Morocco 29650 T 117 117
93 Morocco 29651 G 117 117
94 Morocco 29652 T 117 117
95 Morocco 29653 A 117 117
96 Morocco 29654 G 117 117
97 Morocco 29655 T 117 117
98 Morocco 29656 T 117 117
99 Morocco 29657 A 117 117
100 Morocco 29658 A 117 117
101 Morocco 29659 C 117 117
102 Morocco 29660 T 117 117
103 Morocco 29661 T 117 117
104 Morocco 29662 T 117 117
105 Morocco 29663 A 117 117
106 Morocco 29664 A 117 117
107 Morocco 29665 T 117 117
108 Morocco 29666 C 115 115
109 Morocco 29667 T 115 115
110 Morocco 29668 C 115 115
111 Morocco 29669 A 115 115
112 Morocco 29670 C 115 115
113 Morocco 29671 A 115 115
114 Morocco 29672 T 115 115
115 Morocco 29673 A 115 115
116 Morocco 29674 G 115 115