National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Montenegro 29558 A 12 12
1 Montenegro 29559 T 12 12
2 Montenegro 29560 G 12 12
3 Montenegro 29561 G 12 12
4 Montenegro 29562 G 12 12
5 Montenegro 29563 C 12 12
6 Montenegro 29564 T 12 12
7 Montenegro 29565 A 12 12
8 Montenegro 29566 T 12 12
9 Montenegro 29567 A 12 12
10 Montenegro 29568 T 12 12
11 Montenegro 29569 A 12 12
12 Montenegro 29570 A 12 12
13 Montenegro 29571 A 12 12
14 Montenegro 29572 C 12 12
15 Montenegro 29573 G 12 12
16 Montenegro 29574 T 12 12
17 Montenegro 29575 T 12 12
18 Montenegro 29576 T 12 12
19 Montenegro 29577 T 12 12
20 Montenegro 29578 C 12 12
21 Montenegro 29579 G 12 12
22 Montenegro 29580 C 12 12
23 Montenegro 29581 T 12 12
24 Montenegro 29582 T 12 12
25 Montenegro 29583 T 12 12
26 Montenegro 29584 T 12 12
27 Montenegro 29585 C 12 12
28 Montenegro 29586 C 12 12
29 Montenegro 29587 G 12 12
30 Montenegro 29588 T 12 12
31 Montenegro 29589 T 12 12
32 Montenegro 29590 T 12 12
33 Montenegro 29591 A 12 12
34 Montenegro 29592 C 12 12
35 Montenegro 29593 G 12 12
36 Montenegro 29594 A 12 12
37 Montenegro 29595 T 12 12
38 Montenegro 29596 A 12 12
39 Montenegro 29597 T 12 12
40 Montenegro 29598 A 12 12
41 Montenegro 29599 T 12 12
42 Montenegro 29600 A 12 12
43 Montenegro 29601 G 12 12
44 Montenegro 29602 T 12 12
45 Montenegro 29603 C 12 12
46 Montenegro 29604 T 12 12
47 Montenegro 29605 A 12 12
48 Montenegro 29606 C 12 12
49 Montenegro 29607 T 12 12
50 Montenegro 29608 C 12 12
51 Montenegro 29609 T 12 12
52 Montenegro 29610 T 12 12
53 Montenegro 29611 G 12 12
54 Montenegro 29612 T 12 12
55 Montenegro 29613 G 12 12
56 Montenegro 29614 C 12 12
57 Montenegro 29615 A 12 12
58 Montenegro 29616 G 12 12
59 Montenegro 29617 A 12 12
60 Montenegro 29618 A 12 12
61 Montenegro 29619 T 12 12
62 Montenegro 29620 G 12 12
63 Montenegro 29621 A 12 12
64 Montenegro 29622 A 12 12
65 Montenegro 29623 T 12 12
66 Montenegro 29624 T 12 12
67 Montenegro 29625 C 12 12
68 Montenegro 29626 T 12 12
69 Montenegro 29627 C 12 12
70 Montenegro 29628 G 12 12
71 Montenegro 29629 T 12 12
72 Montenegro 29630 A 12 12
73 Montenegro 29631 A 12 12
74 Montenegro 29632 C 12 12
75 Montenegro 29633 T 12 12
76 Montenegro 29634 A 12 12
77 Montenegro 29635 C 12 12
78 Montenegro 29636 A 12 12
79 Montenegro 29637 T 12 12
80 Montenegro 29638 A 12 12
81 Montenegro 29639 G 12 12
82 Montenegro 29640 C 12 12
83 Montenegro 29641 A 12 12
84 Montenegro 29642 C 12 12
85 Montenegro 29643 A 12 12
86 Montenegro 29644 A 12 12
87 Montenegro 29645 G 12 12
88 Montenegro 29646 T 12 12
89 Montenegro 29647 A 12 12
90 Montenegro 29648 G 12 12
91 Montenegro 29649 A 12 12
92 Montenegro 29650 T 12 12
93 Montenegro 29651 G 12 12
94 Montenegro 29652 T 12 12
95 Montenegro 29653 A 12 12
96 Montenegro 29654 G 12 12
97 Montenegro 29655 T 12 12
98 Montenegro 29656 T 12 12
99 Montenegro 29657 A 12 12
100 Montenegro 29658 A 12 12
101 Montenegro 29659 C 12 12
102 Montenegro 29660 T 12 12
103 Montenegro 29661 T 12 12
104 Montenegro 29662 T 12 12
105 Montenegro 29663 A 12 12
106 Montenegro 29664 A 12 12
107 Montenegro 29665 T 12 12
108 Montenegro 29666 C 12 12
109 Montenegro 29667 T 12 12
110 Montenegro 29668 C 12 12
111 Montenegro 29669 A 12 12
112 Montenegro 29670 C 12 12
113 Montenegro 29671 A 12 12
114 Montenegro 29672 T 12 12
115 Montenegro 29673 A 12 12
116 Montenegro 29674 G 12 12