National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mongolia 29558 A 7 7
1 Mongolia 29559 T 7 7
2 Mongolia 29560 G 7 7
3 Mongolia 29561 G 7 7
4 Mongolia 29562 G 7 7
5 Mongolia 29563 C 7 7
6 Mongolia 29564 T 7 7
7 Mongolia 29565 A 7 7
8 Mongolia 29566 T 7 7
9 Mongolia 29567 A 7 7
10 Mongolia 29568 T 7 7
11 Mongolia 29569 A 7 7
12 Mongolia 29570 A 7 7
13 Mongolia 29571 A 7 7
14 Mongolia 29572 C 7 7
15 Mongolia 29573 G 7 7
16 Mongolia 29574 T 7 7
17 Mongolia 29575 T 7 7
18 Mongolia 29576 T 7 7
19 Mongolia 29577 T 7 7
20 Mongolia 29578 C 7 7
21 Mongolia 29579 G 7 7
22 Mongolia 29580 C 7 7
23 Mongolia 29581 T 7 7
24 Mongolia 29582 T 7 7
25 Mongolia 29583 T 7 7
26 Mongolia 29584 T 7 7
27 Mongolia 29585 C 7 7
28 Mongolia 29586 C 7 7
29 Mongolia 29587 G 7 7
30 Mongolia 29588 T 7 7
31 Mongolia 29589 T 7 7
32 Mongolia 29590 T 7 7
33 Mongolia 29591 A 7 7
34 Mongolia 29592 C 7 7
35 Mongolia 29593 G 7 7
36 Mongolia 29594 A 7 7
37 Mongolia 29595 T 7 7
38 Mongolia 29596 A 7 7
39 Mongolia 29597 T 7 7
40 Mongolia 29598 A 7 7
41 Mongolia 29599 T 7 7
42 Mongolia 29600 A 7 7
43 Mongolia 29601 G 7 7
44 Mongolia 29602 T 7 7
45 Mongolia 29603 C 7 7
46 Mongolia 29604 T 7 7
47 Mongolia 29605 A 7 7
48 Mongolia 29606 C 7 7
49 Mongolia 29607 T 7 7
50 Mongolia 29608 C 7 7
51 Mongolia 29609 T 7 7
52 Mongolia 29610 T 7 7
53 Mongolia 29611 G 7 7
54 Mongolia 29612 T 7 7
55 Mongolia 29613 G 7 7
56 Mongolia 29614 C 7 7
57 Mongolia 29615 A 7 7
58 Mongolia 29616 G 7 7
59 Mongolia 29617 A 7 7
60 Mongolia 29618 A 7 7
61 Mongolia 29619 T 7 7
62 Mongolia 29620 G 7 7
63 Mongolia 29621 A 7 7
64 Mongolia 29622 A 7 7
65 Mongolia 29623 T 7 7
66 Mongolia 29624 T 7 7
67 Mongolia 29625 C 7 7
68 Mongolia 29626 T 7 7
69 Mongolia 29627 C 7 7
70 Mongolia 29628 G 7 7
71 Mongolia 29629 T 7 7
72 Mongolia 29630 A 7 7
73 Mongolia 29631 A 7 7
74 Mongolia 29632 C 7 7
75 Mongolia 29633 T 7 7
76 Mongolia 29634 A 7 7
77 Mongolia 29635 C 7 7
78 Mongolia 29636 A 7 7
79 Mongolia 29637 T 7 7
80 Mongolia 29638 A 7 7
81 Mongolia 29639 G 7 7
82 Mongolia 29640 C 7 7
83 Mongolia 29641 A 7 7
84 Mongolia 29642 C 7 7
85 Mongolia 29643 A 7 7
86 Mongolia 29644 A 7 7
87 Mongolia 29645 G 7 7
88 Mongolia 29646 T 7 7
89 Mongolia 29647 A 7 7
90 Mongolia 29648 G 7 7
91 Mongolia 29649 A 7 7
92 Mongolia 29650 T 7 7
93 Mongolia 29651 G 7 7
94 Mongolia 29652 T 7 7
95 Mongolia 29653 A 7 7
96 Mongolia 29654 G 7 7
97 Mongolia 29655 T 7 7
98 Mongolia 29656 T 7 7
99 Mongolia 29657 A 7 7
100 Mongolia 29658 A 7 7
101 Mongolia 29659 C 7 7
102 Mongolia 29660 T 7 7
103 Mongolia 29661 T 7 7
104 Mongolia 29662 T 7 7
105 Mongolia 29663 A 7 7
106 Mongolia 29664 A 7 7
107 Mongolia 29665 T 7 7
108 Mongolia 29666 C 7 7
109 Mongolia 29667 T 7 7
110 Mongolia 29668 C 7 7
111 Mongolia 29669 A 7 7
112 Mongolia 29670 C 7 7
113 Mongolia 29671 A 7 7
114 Mongolia 29672 T 7 7
115 Mongolia 29673 A 7 7
116 Mongolia 29674 G 7 7