National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Moldova 29558 A 8 8
1 Moldova 29559 T 8 8
2 Moldova 29560 G 8 8
3 Moldova 29561 G 8 8
4 Moldova 29562 G 8 8
5 Moldova 29563 C 8 8
6 Moldova 29564 T 8 8
7 Moldova 29565 A 8 8
8 Moldova 29566 T 8 8
9 Moldova 29567 A 8 8
10 Moldova 29568 T 8 8
11 Moldova 29569 A 8 8
12 Moldova 29570 A 8 8
13 Moldova 29571 A 8 8
14 Moldova 29572 C 8 8
15 Moldova 29573 G 8 8
16 Moldova 29574 T 8 8
17 Moldova 29575 T 8 8
18 Moldova 29576 T 8 8
19 Moldova 29577 T 8 8
20 Moldova 29578 C 8 8
21 Moldova 29579 G 8 8
22 Moldova 29580 C 8 8
23 Moldova 29581 T 8 8
24 Moldova 29582 T 8 8
25 Moldova 29583 T 8 8
26 Moldova 29584 T 8 8
27 Moldova 29585 C 8 8
28 Moldova 29586 C 8 8
29 Moldova 29587 G 8 8
30 Moldova 29588 T 8 8
31 Moldova 29589 T 8 8
32 Moldova 29590 T 8 8
33 Moldova 29591 A 8 8
34 Moldova 29592 C 8 8
35 Moldova 29593 G 8 8
36 Moldova 29594 A 8 8
37 Moldova 29595 T 8 8
38 Moldova 29596 A 8 8
39 Moldova 29597 T 8 8
40 Moldova 29598 A 8 8
41 Moldova 29599 T 8 8
42 Moldova 29600 A 8 8
43 Moldova 29601 G 8 8
44 Moldova 29602 T 8 8
45 Moldova 29603 C 8 8
46 Moldova 29604 T 8 8
47 Moldova 29605 A 8 8
48 Moldova 29606 C 8 8
49 Moldova 29607 T 8 8
50 Moldova 29608 C 8 8
51 Moldova 29609 T 8 8
52 Moldova 29610 T 8 8
53 Moldova 29611 G 8 8
54 Moldova 29612 T 8 8
55 Moldova 29613 G 8 8
56 Moldova 29614 C 8 8
57 Moldova 29615 A 8 8
58 Moldova 29616 G 8 8
59 Moldova 29617 A 8 8
60 Moldova 29618 A 8 8
61 Moldova 29619 T 8 8
62 Moldova 29620 G 8 8
63 Moldova 29621 A 8 8
64 Moldova 29622 A 8 8
65 Moldova 29623 T 8 8
66 Moldova 29624 T 8 8
67 Moldova 29625 C 8 8
68 Moldova 29626 T 8 8
69 Moldova 29627 C 8 8
70 Moldova 29628 G 8 8
71 Moldova 29629 T 8 8
72 Moldova 29630 A 8 8
73 Moldova 29631 A 8 8
74 Moldova 29632 C 8 8
75 Moldova 29633 T 8 8
76 Moldova 29634 A 8 8
77 Moldova 29635 C 8 8
78 Moldova 29636 A 8 8
79 Moldova 29637 T 8 8
80 Moldova 29638 A 8 8
81 Moldova 29639 G 8 8
82 Moldova 29640 C 8 8
83 Moldova 29641 A 8 8
84 Moldova 29642 C 8 8
85 Moldova 29643 A 8 8
86 Moldova 29644 A 8 8
87 Moldova 29645 G 8 8
88 Moldova 29646 T 8 8
89 Moldova 29647 A 8 8
90 Moldova 29648 G 8 8
91 Moldova 29649 A 8 8
92 Moldova 29650 T 8 8
93 Moldova 29651 G 8 8
94 Moldova 29652 T 8 8
95 Moldova 29653 A 8 8
96 Moldova 29654 G 8 8
97 Moldova 29655 T 8 8
98 Moldova 29656 T 8 8
99 Moldova 29657 A 8 8
100 Moldova 29658 A 8 8
101 Moldova 29659 C 8 8
102 Moldova 29660 T 8 8
103 Moldova 29661 T 8 8
104 Moldova 29662 T 8 8
105 Moldova 29663 A 8 8
106 Moldova 29664 A 8 8
107 Moldova 29665 T 8 8
108 Moldova 29666 C 8 8
109 Moldova 29667 T 8 8
110 Moldova 29668 C 8 8
111 Moldova 29669 A 8 8
112 Moldova 29670 C 8 8
113 Moldova 29671 A 8 8
114 Moldova 29672 T 8 8
115 Moldova 29673 A 8 8
116 Moldova 29674 G 8 8