National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3   1                            
D     3                                
F     12             1                  
G     3                                
I     9                           1 1  
L     12                                
M     6                                
N     16                         1      
P     3                                
Q 1   3                                
R     6                                
S     6                                
T     6                           1    
V     12                             1  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mexico 29558 A 597 597
1 Mexico 29559 T 597 597
2 Mexico 29560 G 597 597
3 Mexico 29561 G 597 597
4 Mexico 29562 G 597 597
5 Mexico 29563 C 597 597
6 Mexico 29564 T 597 597
7 Mexico 29565 A 597 597
8 Mexico 29566 T 597 597
9 Mexico 29567 A G 597 594 Ile4Val
10 Mexico 29568 T 597 597
11 Mexico 29569 A 597 597
12 Mexico 29570 A 597 597
13 Mexico 29571 A 597 597
14 Mexico 29572 C 597 597
15 Mexico 29573 G 597 597
16 Mexico 29574 T 597 597
17 Mexico 29575 T 597 597
18 Mexico 29576 T 597 597
19 Mexico 29577 T 597 597
20 Mexico 29578 C 597 597
21 Mexico 29579 G 597 597
22 Mexico 29580 C 597 597
23 Mexico 29581 T 597 597
24 Mexico 29582 T 597 597
25 Mexico 29583 T 597 597
26 Mexico 29584 T 597 597
27 Mexico 29585 C 597 597
28 Mexico 29586 C 597 597
29 Mexico 29587 G 597 597
30 Mexico 29588 T C 597 596 Phe11Leu
31 Mexico 29589 T 597 597
32 Mexico 29590 T 597 597
33 Mexico 29591 A 597 597
34 Mexico 29592 C 597 597
35 Mexico 29593 G A 597 596 Thr12Thr
36 Mexico 29594 A 597 595
37 Mexico 29595 T C 597 591 Ile13Thr
38 Mexico 29596 A 597 597
39 Mexico 29597 T 597 597
40 Mexico 29598 A 597 597
41 Mexico 29599 T 597 597
42 Mexico 29600 A 597 597
43 Mexico 29601 G 597 597
44 Mexico 29602 T 597 597
45 Mexico 29603 C 597 597
46 Mexico 29604 T 597 597
47 Mexico 29605 A 597 597
48 Mexico 29606 C 597 597
49 Mexico 29607 T 597 597
50 Mexico 29608 C 597 597
51 Mexico 29609 T 597 597
52 Mexico 29610 T 597 597
53 Mexico 29611 G 597 597
54 Mexico 29612 T 597 597
55 Mexico 29613 G 597 597
56 Mexico 29614 C T 597 595 Cys19Cys
57 Mexico 29615 A 597 597
58 Mexico 29616 G 597 597
59 Mexico 29617 A 597 597
60 Mexico 29618 A 597 597
61 Mexico 29619 T 597 597
62 Mexico 29620 G 597 597
63 Mexico 29621 A 597 597
64 Mexico 29622 A G 597 596 Asn22Ser
65 Mexico 29623 T 597 597
66 Mexico 29624 T 597 597
67 Mexico 29625 C 597 597
68 Mexico 29626 T 597 597
69 Mexico 29627 C 597 597
70 Mexico 29628 G 597 597
71 Mexico 29629 T 597 597
72 Mexico 29630 A 597 597
73 Mexico 29631 A 597 597
74 Mexico 29632 C 597 597
75 Mexico 29633 T 597 597
76 Mexico 29634 A 597 597
77 Mexico 29635 C 597 597
78 Mexico 29636 A 597 597
79 Mexico 29637 T 597 597
80 Mexico 29638 A 597 597
81 Mexico 29639 G 597 597
82 Mexico 29640 C 597 597
83 Mexico 29641 A 597 597
84 Mexico 29642 C T 597 596 Gln29*
85 Mexico 29643 A 597 597
86 Mexico 29644 A 597 597
87 Mexico 29645 G 597 597
88 Mexico 29646 T 597 597
89 Mexico 29647 A G 597 596 Val30Val
90 Mexico 29648 G 597 597
91 Mexico 29649 A 597 597
92 Mexico 29650 T 597 597
93 Mexico 29651 G 597 597
94 Mexico 29652 T 597 597
95 Mexico 29653 A 597 597
96 Mexico 29654 G 597 597
97 Mexico 29655 T 596 596
98 Mexico 29656 T 596 596
99 Mexico 29657 A 596 596
100 Mexico 29658 A 596 596
101 Mexico 29659 C 596 596
102 Mexico 29660 T 596 596
103 Mexico 29661 T 595 595
104 Mexico 29662 T 595 595
105 Mexico 29663 A 595 595
106 Mexico 29664 A 595 595
107 Mexico 29665 T 595 595
108 Mexico 29666 C 590 590
109 Mexico 29667 T 590 590
110 Mexico 29668 C 590 590
111 Mexico 29669 A 590 590
112 Mexico 29670 C 590 590
113 Mexico 29671 A 590 590
114 Mexico 29672 T 590 590
115 Mexico 29673 A 590 590
116 Mexico 29674 G 590 590