National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Malta 29558 A 10 10
1 Malta 29559 T 10 10
2 Malta 29560 G 10 10
3 Malta 29561 G 10 10
4 Malta 29562 G 10 10
5 Malta 29563 C 10 10
6 Malta 29564 T 10 10
7 Malta 29565 A 10 10
8 Malta 29566 T 10 10
9 Malta 29567 A 10 10
10 Malta 29568 T 10 10
11 Malta 29569 A 10 10
12 Malta 29570 A 10 10
13 Malta 29571 A 10 10
14 Malta 29572 C 10 10
15 Malta 29573 G 10 10
16 Malta 29574 T 10 10
17 Malta 29575 T 10 10
18 Malta 29576 T 10 10
19 Malta 29577 T 10 10
20 Malta 29578 C 10 10
21 Malta 29579 G 10 10
22 Malta 29580 C 10 10
23 Malta 29581 T 10 10
24 Malta 29582 T 10 10
25 Malta 29583 T 10 10
26 Malta 29584 T 10 10
27 Malta 29585 C 10 10
28 Malta 29586 C 10 10
29 Malta 29587 G 10 10
30 Malta 29588 T 10 10
31 Malta 29589 T 10 10
32 Malta 29590 T 10 10
33 Malta 29591 A 10 10
34 Malta 29592 C 10 10
35 Malta 29593 G 10 10
36 Malta 29594 A 10 10
37 Malta 29595 T 10 10
38 Malta 29596 A 10 10
39 Malta 29597 T 10 10
40 Malta 29598 A 10 10
41 Malta 29599 T 10 10
42 Malta 29600 A 10 10
43 Malta 29601 G 10 10
44 Malta 29602 T 10 10
45 Malta 29603 C 10 10
46 Malta 29604 T 10 10
47 Malta 29605 A 10 10
48 Malta 29606 C 10 10
49 Malta 29607 T 10 10
50 Malta 29608 C 10 10
51 Malta 29609 T 10 10
52 Malta 29610 T 10 10
53 Malta 29611 G 10 10
54 Malta 29612 T 10 10
55 Malta 29613 G 10 10
56 Malta 29614 C 10 10
57 Malta 29615 A 10 10
58 Malta 29616 G 10 10
59 Malta 29617 A 10 10
60 Malta 29618 A 10 10
61 Malta 29619 T 10 10
62 Malta 29620 G 10 10
63 Malta 29621 A 10 10
64 Malta 29622 A 10 10
65 Malta 29623 T 10 10
66 Malta 29624 T 10 10
67 Malta 29625 C 10 10
68 Malta 29626 T 10 10
69 Malta 29627 C 10 10
70 Malta 29628 G 10 10
71 Malta 29629 T 10 10
72 Malta 29630 A 10 10
73 Malta 29631 A 10 10
74 Malta 29632 C 10 10
75 Malta 29633 T 10 10
76 Malta 29634 A 10 10
77 Malta 29635 C 10 10
78 Malta 29636 A 10 10
79 Malta 29637 T 10 10
80 Malta 29638 A 10 10
81 Malta 29639 G 10 10
82 Malta 29640 C 10 10
83 Malta 29641 A 10 10
84 Malta 29642 C 10 10
85 Malta 29643 A 10 10
86 Malta 29644 A 10 10
87 Malta 29645 G 10 10
88 Malta 29646 T 10 10
89 Malta 29647 A 10 10
90 Malta 29648 G 10 10
91 Malta 29649 A 10 10
92 Malta 29650 T 10 10
93 Malta 29651 G 10 10
94 Malta 29652 T 10 10
95 Malta 29653 A 10 10
96 Malta 29654 G 10 10
97 Malta 29655 T 10 10
98 Malta 29656 T 10 10
99 Malta 29657 A 10 10
100 Malta 29658 A 10 10
101 Malta 29659 C 10 10
102 Malta 29660 T 10 10
103 Malta 29661 T 10 10
104 Malta 29662 T 10 10
105 Malta 29663 A 10 10
106 Malta 29664 A 10 10
107 Malta 29665 T 10 10
108 Malta 29666 C 8 8
109 Malta 29667 T 8 8
110 Malta 29668 C 8 8
111 Malta 29669 A 8 8
112 Malta 29670 C 8 8
113 Malta 29671 A 8 8
114 Malta 29672 T 8 8
115 Malta 29673 A 8 8
116 Malta 29674 G 8 8