National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                         1      
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Mali 29558 A 23 23
1 Mali 29559 T 23 23
2 Mali 29560 G 23 23
3 Mali 29561 G 23 23
4 Mali 29562 G 23 23
5 Mali 29563 C 23 23
6 Mali 29564 T 23 23
7 Mali 29565 A 23 23
8 Mali 29566 T 23 23
9 Mali 29567 A 23 23
10 Mali 29568 T 23 23
11 Mali 29569 A 23 23
12 Mali 29570 A 23 23
13 Mali 29571 A 23 23
14 Mali 29572 C 23 23
15 Mali 29573 G 23 23
16 Mali 29574 T 23 23
17 Mali 29575 T 23 23
18 Mali 29576 T 23 23
19 Mali 29577 T 23 23
20 Mali 29578 C 23 23
21 Mali 29579 G 23 23
22 Mali 29580 C 23 23
23 Mali 29581 T 23 23
24 Mali 29582 T 23 23
25 Mali 29583 T 23 23
26 Mali 29584 T 23 23
27 Mali 29585 C T 23 22 Pro10Ser
28 Mali 29586 C 23 23
29 Mali 29587 G 23 23
30 Mali 29588 T 23 23
31 Mali 29589 T 23 23
32 Mali 29590 T 23 23
33 Mali 29591 A 23 23
34 Mali 29592 C 23 23
35 Mali 29593 G 23 23
36 Mali 29594 A 23 23
37 Mali 29595 T 23 23
38 Mali 29596 A 23 23
39 Mali 29597 T 23 23
40 Mali 29598 A 23 23
41 Mali 29599 T 23 23
42 Mali 29600 A 23 23
43 Mali 29601 G 23 23
44 Mali 29602 T 23 23
45 Mali 29603 C 24 24
46 Mali 29604 T 24 24
47 Mali 29605 A 24 24
48 Mali 29606 C 24 24
49 Mali 29607 T 24 24
50 Mali 29608 C 24 24
51 Mali 29609 T 24 24
52 Mali 29610 T 24 24
53 Mali 29611 G 24 24
54 Mali 29612 T 24 24
55 Mali 29613 G 24 24
56 Mali 29614 C 24 24
57 Mali 29615 A 24 24
58 Mali 29616 G 24 24
59 Mali 29617 A 24 24
60 Mali 29618 A 24 24
61 Mali 29619 T 24 24
62 Mali 29620 G 24 24
63 Mali 29621 A 24 24
64 Mali 29622 A 24 24
65 Mali 29623 T 24 24
66 Mali 29624 T 24 24
67 Mali 29625 C 24 24
68 Mali 29626 T 24 24
69 Mali 29627 C 24 24
70 Mali 29628 G 24 24
71 Mali 29629 T 24 24
72 Mali 29630 A 24 24
73 Mali 29631 A 24 24
74 Mali 29632 C 24 24
75 Mali 29633 T 24 24
76 Mali 29634 A 24 24
77 Mali 29635 C 24 24
78 Mali 29636 A 24 24
79 Mali 29637 T 24 24
80 Mali 29638 A 24 24
81 Mali 29639 G 24 24
82 Mali 29640 C 24 24
83 Mali 29641 A 24 24
84 Mali 29642 C 24 24
85 Mali 29643 A 24 24
86 Mali 29644 A 24 24
87 Mali 29645 G 24 24
88 Mali 29646 T 24 24
89 Mali 29647 A 24 24
90 Mali 29648 G 24 24
91 Mali 29649 A 24 24
92 Mali 29650 T 24 24
93 Mali 29651 G 24 24
94 Mali 29652 T 24 24
95 Mali 29653 A 24 24
96 Mali 29654 G 24 24
97 Mali 29655 T 24 24
98 Mali 29656 T 24 24
99 Mali 29657 A 24 24
100 Mali 29658 A 24 24
101 Mali 29659 C 24 24
102 Mali 29660 T 24 24
103 Mali 29661 T 24 24
104 Mali 29662 T 24 24
105 Mali 29663 A 24 24
106 Mali 29664 A 24 24
107 Mali 29665 T 24 24
108 Mali 29666 C 24 24
109 Mali 29667 T 24 24
110 Mali 29668 C 24 24
111 Mali 29669 A 24 24
112 Mali 29670 C 24 24
113 Mali 29671 A 24 24
114 Mali 29672 T 24 24
115 Mali 29673 A 24 24
116 Mali 29674 G 24 24