National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3   1                            
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6       1                        
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Malaysia 29558 A 318 318
1 Malaysia 29559 T 318 318
2 Malaysia 29560 G 318 318
3 Malaysia 29561 G 318 318
4 Malaysia 29562 G 318 318
5 Malaysia 29563 C 318 318
6 Malaysia 29564 T 318 318
7 Malaysia 29565 A 318 318
8 Malaysia 29566 T 318 318
9 Malaysia 29567 A 318 318
10 Malaysia 29568 T 318 318
11 Malaysia 29569 A 318 318
12 Malaysia 29570 A 318 318
13 Malaysia 29571 A 318 318
14 Malaysia 29572 C 318 318
15 Malaysia 29573 G 318 318
16 Malaysia 29574 T 318 318
17 Malaysia 29575 T 318 318
18 Malaysia 29576 T 318 318
19 Malaysia 29577 T 318 318
20 Malaysia 29578 C 318 318
21 Malaysia 29579 G 318 318
22 Malaysia 29580 C 318 318
23 Malaysia 29581 T 318 318
24 Malaysia 29582 T 318 318
25 Malaysia 29583 T 318 318
26 Malaysia 29584 T 318 318
27 Malaysia 29585 C 318 318
28 Malaysia 29586 C 318 318
29 Malaysia 29587 G 318 318
30 Malaysia 29588 T 318 318
31 Malaysia 29589 T 318 318
32 Malaysia 29590 T 318 318
33 Malaysia 29591 A 318 318
34 Malaysia 29592 C 318 318
35 Malaysia 29593 G 318 318
36 Malaysia 29594 A 318 318
37 Malaysia 29595 T 318 318
38 Malaysia 29596 A 318 318
39 Malaysia 29597 T 318 318
40 Malaysia 29598 A 318 318
41 Malaysia 29599 T 318 318
42 Malaysia 29600 A 318 318
43 Malaysia 29601 G 318 318
44 Malaysia 29602 T 318 318
45 Malaysia 29603 C 318 318
46 Malaysia 29604 T 318 318
47 Malaysia 29605 A 318 318
48 Malaysia 29606 C 318 318
49 Malaysia 29607 T 318 318
50 Malaysia 29608 C 318 318
51 Malaysia 29609 T 318 318
52 Malaysia 29610 T 318 318
53 Malaysia 29611 G 318 318
54 Malaysia 29612 T 318 318
55 Malaysia 29613 G 318 318
56 Malaysia 29614 C T 318 315 Cys19Cys
57 Malaysia 29615 A 318 318
58 Malaysia 29616 G 318 318
59 Malaysia 29617 A 318 318
60 Malaysia 29618 A 318 318
61 Malaysia 29619 T 318 318
62 Malaysia 29620 G 318 318
63 Malaysia 29621 A 318 318
64 Malaysia 29622 A 318 318
65 Malaysia 29623 T 318 318
66 Malaysia 29624 T 318 318
67 Malaysia 29625 C T 318 299 Ser23Phe
68 Malaysia 29626 T 318 318
69 Malaysia 29627 C 318 318
70 Malaysia 29628 G 318 318
71 Malaysia 29629 T 318 318
72 Malaysia 29630 A 318 318
73 Malaysia 29631 A 318 318
74 Malaysia 29632 C 318 318
75 Malaysia 29633 T 318 318
76 Malaysia 29634 A 318 318
77 Malaysia 29635 C 318 318
78 Malaysia 29636 A 318 318
79 Malaysia 29637 T 318 318
80 Malaysia 29638 A 318 318
81 Malaysia 29639 G 318 318
82 Malaysia 29640 C 318 318
83 Malaysia 29641 A 318 318
84 Malaysia 29642 C 318 318
85 Malaysia 29643 A 318 318
86 Malaysia 29644 A 318 318
87 Malaysia 29645 G T 318 317 Val30Leu
88 Malaysia 29646 T 318 318
89 Malaysia 29647 A 318 318
90 Malaysia 29648 G 318 318
91 Malaysia 29649 A 318 318
92 Malaysia 29650 T 318 318
93 Malaysia 29651 G 318 318
94 Malaysia 29652 T 318 318
95 Malaysia 29653 A 318 318
96 Malaysia 29654 G 318 318
97 Malaysia 29655 T 318 318
98 Malaysia 29656 T 318 318
99 Malaysia 29657 A 318 318
100 Malaysia 29658 A 318 318
101 Malaysia 29659 C 318 318
102 Malaysia 29660 T 318 318
103 Malaysia 29661 T 318 318
104 Malaysia 29662 T 318 318
105 Malaysia 29663 A 318 318
106 Malaysia 29664 A 318 318
107 Malaysia 29665 T 318 318
108 Malaysia 29666 C 318 318
109 Malaysia 29667 T 318 318
110 Malaysia 29668 C 318 318
111 Malaysia 29669 A 318 318
112 Malaysia 29670 C 318 318
113 Malaysia 29671 A 318 318
114 Malaysia 29672 T 318 318
115 Malaysia 29673 A 318 318
116 Malaysia 29674 G 318 318