National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Madagascar 29558 A 6 6
1 Madagascar 29559 T 6 6
2 Madagascar 29560 G 6 6
3 Madagascar 29561 G 6 6
4 Madagascar 29562 G 6 6
5 Madagascar 29563 C 6 6
6 Madagascar 29564 T 6 6
7 Madagascar 29565 A 6 6
8 Madagascar 29566 T 6 6
9 Madagascar 29567 A 6 6
10 Madagascar 29568 T 6 6
11 Madagascar 29569 A 6 6
12 Madagascar 29570 A 6 6
13 Madagascar 29571 A 6 6
14 Madagascar 29572 C 6 6
15 Madagascar 29573 G 6 6
16 Madagascar 29574 T 6 6
17 Madagascar 29575 T 6 6
18 Madagascar 29576 T 6 6
19 Madagascar 29577 T 6 6
20 Madagascar 29578 C 6 6
21 Madagascar 29579 G 6 6
22 Madagascar 29580 C 6 6
23 Madagascar 29581 T 6 6
24 Madagascar 29582 T 6 6
25 Madagascar 29583 T 6 6
26 Madagascar 29584 T 6 6
27 Madagascar 29585 C 6 6
28 Madagascar 29586 C 6 6
29 Madagascar 29587 G 6 6
30 Madagascar 29588 T 6 6
31 Madagascar 29589 T 6 6
32 Madagascar 29590 T 6 6
33 Madagascar 29591 A 6 6
34 Madagascar 29592 C 6 6
35 Madagascar 29593 G 6 6
36 Madagascar 29594 A 6 6
37 Madagascar 29595 T 6 6
38 Madagascar 29596 A 6 6
39 Madagascar 29597 T 6 6
40 Madagascar 29598 A 6 6
41 Madagascar 29599 T 6 6
42 Madagascar 29600 A 6 6
43 Madagascar 29601 G 6 6
44 Madagascar 29602 T 6 6
45 Madagascar 29603 C 6 6
46 Madagascar 29604 T 6 6
47 Madagascar 29605 A 6 6
48 Madagascar 29606 C 6 6
49 Madagascar 29607 T 6 6
50 Madagascar 29608 C 6 6
51 Madagascar 29609 T 6 6
52 Madagascar 29610 T 6 6
53 Madagascar 29611 G 6 6
54 Madagascar 29612 T 6 6
55 Madagascar 29613 G 6 6
56 Madagascar 29614 C 6 6
57 Madagascar 29615 A 6 6
58 Madagascar 29616 G 6 6
59 Madagascar 29617 A 6 6
60 Madagascar 29618 A 6 6
61 Madagascar 29619 T 6 6
62 Madagascar 29620 G 6 6
63 Madagascar 29621 A 6 6
64 Madagascar 29622 A 6 6
65 Madagascar 29623 T 6 6
66 Madagascar 29624 T 6 6
67 Madagascar 29625 C 6 6
68 Madagascar 29626 T 6 6
69 Madagascar 29627 C 6 6
70 Madagascar 29628 G 6 6
71 Madagascar 29629 T 6 6
72 Madagascar 29630 A 6 6
73 Madagascar 29631 A 6 6
74 Madagascar 29632 C 6 6
75 Madagascar 29633 T 6 6
76 Madagascar 29634 A 6 6
77 Madagascar 29635 C 6 6
78 Madagascar 29636 A 6 6
79 Madagascar 29637 T 6 6
80 Madagascar 29638 A 6 6
81 Madagascar 29639 G 6 6
82 Madagascar 29640 C 6 6
83 Madagascar 29641 A 6 6
84 Madagascar 29642 C 6 6
85 Madagascar 29643 A 6 6
86 Madagascar 29644 A 6 6
87 Madagascar 29645 G 6 6
88 Madagascar 29646 T 6 6
89 Madagascar 29647 A 6 6
90 Madagascar 29648 G 6 6
91 Madagascar 29649 A 6 6
92 Madagascar 29650 T 6 6
93 Madagascar 29651 G 6 6
94 Madagascar 29652 T 6 6
95 Madagascar 29653 A 6 6
96 Madagascar 29654 G 6 6
97 Madagascar 29655 T 6 6
98 Madagascar 29656 T 6 6
99 Madagascar 29657 A 6 6
100 Madagascar 29658 A 6 6
101 Madagascar 29659 C 6 6
102 Madagascar 29660 T 6 6
103 Madagascar 29661 T 6 6
104 Madagascar 29662 T 6 6
105 Madagascar 29663 A 6 6
106 Madagascar 29664 A 6 6
107 Madagascar 29665 T 6 6
108 Madagascar 29666 C 6 6
109 Madagascar 29667 T 6 6
110 Madagascar 29668 C 6 6
111 Madagascar 29669 A 6 6
112 Madagascar 29670 C 6 6
113 Madagascar 29671 A 6 6
114 Madagascar 29672 T 6 6
115 Madagascar 29673 A 6 6
116 Madagascar 29674 G 6 6