National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             2  
C     3   1                            
D     3                               1
F     12             1           1      
G     3                                
I     9               1                
L     12                                
M     6                                
N     16                 1              
P     3                                
Q 1   3                                
R     6   1                            
S     6                                
T     6           1                    
V     12             1                  
Y     9                               1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Luxembourg 29558 A 2212 2212
1 Luxembourg 29559 T 2212 2212
2 Luxembourg 29560 G 2213 2213
3 Luxembourg 29561 G 2213 2213
4 Luxembourg 29562 G 2213 2213
5 Luxembourg 29563 C 2213 2212
6 Luxembourg 29564 T 2213 2212
7 Luxembourg 29565 A 2213 2213
8 Luxembourg 29566 T 2213 2213
9 Luxembourg 29567 A 2213 2213
10 Luxembourg 29568 T 2213 2213
11 Luxembourg 29569 A 2213 2213
12 Luxembourg 29570 A 2213 2213
13 Luxembourg 29571 A 2213 2213
14 Luxembourg 29572 C 2213 2213
15 Luxembourg 29573 G 2213 2213
16 Luxembourg 29574 T 2213 2213
17 Luxembourg 29575 T 2213 2213
18 Luxembourg 29576 T 2213 2213
19 Luxembourg 29577 T 2213 2213
20 Luxembourg 29578 C A 2213 2210 Phe7Leu
21 Luxembourg 29579 G 2213 2213
22 Luxembourg 29580 C T 2213 2212 Ala8Val
23 Luxembourg 29581 T 2213 2213
24 Luxembourg 29582 T 2213 2213
25 Luxembourg 29583 T 2213 2213
26 Luxembourg 29584 T 2213 2213
27 Luxembourg 29585 C 2213 2213
28 Luxembourg 29586 C 2213 2213
29 Luxembourg 29587 G 2213 2213
30 Luxembourg 29588 T 2213 2212
31 Luxembourg 29589 T C 2213 2211 Phe11Ser
32 Luxembourg 29590 T 2213 2212
33 Luxembourg 29591 A 2214 2213
34 Luxembourg 29592 C 2214 2213
35 Luxembourg 29593 G 2214 2213
36 Luxembourg 29594 A 2215 2214
37 Luxembourg 29595 T 2215 2214
38 Luxembourg 29596 A G 2215 2212 Ile13Met
39 Luxembourg 29597 T 2215 2213
40 Luxembourg 29598 A 2215 2213
41 Luxembourg 29599 T 2215 2213
42 Luxembourg 29600 A 2215 2214
43 Luxembourg 29601 G 2215 2215
44 Luxembourg 29602 T 2215 2214
45 Luxembourg 29603 C 2214 2214
46 Luxembourg 29604 T 2214 2214
47 Luxembourg 29605 A 2214 2214
48 Luxembourg 29606 C 2213 2213
49 Luxembourg 29607 T 2213 2213
50 Luxembourg 29608 C 2211 2208
51 Luxembourg 29609 T 2211 2208
52 Luxembourg 29610 T 2211 2208
53 Luxembourg 29611 G 2211 2208
54 Luxembourg 29612 T 2211 2210
55 Luxembourg 29613 G 2211 2210
56 Luxembourg 29614 C T 2211 2205 Cys19Cys
57 Luxembourg 29615 A 2211 2209
58 Luxembourg 29616 G 2211 2209
59 Luxembourg 29617 A 2211 2210
60 Luxembourg 29618 A 2211 2210
61 Luxembourg 29619 T 2211 2210
62 Luxembourg 29620 G 2211 2210
63 Luxembourg 29621 A 2211 2210
64 Luxembourg 29622 A 2212 2211
65 Luxembourg 29623 T 2212 2211
66 Luxembourg 29624 T 2212 2211
67 Luxembourg 29625 C 2211 2210
68 Luxembourg 29626 T 2211 2210
69 Luxembourg 29627 C T 2211 2205 Arg24Cys
70 Luxembourg 29628 G 2211 2210
71 Luxembourg 29629 T 2211 2211
72 Luxembourg 29630 A 2211 2211
73 Luxembourg 29631 A 2211 2211
74 Luxembourg 29632 C 2212 2212
75 Luxembourg 29633 T 2212 2212
76 Luxembourg 29634 A 2213 2213
77 Luxembourg 29635 C T 2213 2212 Tyr26Tyr
78 Luxembourg 29636 A 2213 2213
79 Luxembourg 29637 T 2213 2213
80 Luxembourg 29638 A 2213 2213
81 Luxembourg 29639 G 2213 2213
82 Luxembourg 29640 C T 2213 2210 Ala28Val
83 Luxembourg 29641 A 2213 2213
84 Luxembourg 29642 C T 2212 2209 Gln29*
85 Luxembourg 29643 A 2212 2212
86 Luxembourg 29644 A 2212 2212
87 Luxembourg 29645 G T 2212 1808 Val30Leu
88 Luxembourg 29646 T 2212 2212
89 Luxembourg 29647 A 2212 2212
90 Luxembourg 29648 G T 2212 2200 Asp31Tyr
91 Luxembourg 29649 A 2212 2212
92 Luxembourg 29650 T 2211 2211
93 Luxembourg 29651 G 2211 2211
94 Luxembourg 29652 T 2210 2210
95 Luxembourg 29653 A 2210 2210
96 Luxembourg 29654 G 2210 2210
97 Luxembourg 29655 T 2210 2210
98 Luxembourg 29656 T 2210 2210
99 Luxembourg 29657 A 2210 2210
100 Luxembourg 29658 A 2210 2210
101 Luxembourg 29659 C 2209 2209
102 Luxembourg 29660 T 2209 2209
103 Luxembourg 29661 T 2209 2209
104 Luxembourg 29662 T 2208 2208
105 Luxembourg 29663 A 2207 2207
106 Luxembourg 29664 A 2207 2207
107 Luxembourg 29665 T C 2207 2180 Asn36Asn
108 Luxembourg 29666 C 2207 2207
109 Luxembourg 29667 T 2207 2207
110 Luxembourg 29668 C 2207 2207
111 Luxembourg 29669 A 2207 2207
112 Luxembourg 29670 C T 2207 2196 Thr38Ile
113 Luxembourg 29671 A 2207 2207
114 Luxembourg 29672 T 2207 2207
115 Luxembourg 29673 A 2206 2206
116 Luxembourg 29674 G 2206 2206