National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                               1
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q 1   3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Lithuania 29558 A 235 235
1 Lithuania 29559 T 235 235
2 Lithuania 29560 G 235 235
3 Lithuania 29561 G 235 235
4 Lithuania 29562 G 235 235
5 Lithuania 29563 C 235 235
6 Lithuania 29564 T 235 235
7 Lithuania 29565 A 235 235
8 Lithuania 29566 T 235 235
9 Lithuania 29567 A 235 235
10 Lithuania 29568 T 235 235
11 Lithuania 29569 A 235 235
12 Lithuania 29570 A 235 235
13 Lithuania 29571 A 235 235
14 Lithuania 29572 C 235 235
15 Lithuania 29573 G 235 235
16 Lithuania 29574 T 235 235
17 Lithuania 29575 T 235 235
18 Lithuania 29576 T 235 235
19 Lithuania 29577 T 235 235
20 Lithuania 29578 C 235 235
21 Lithuania 29579 G 235 235
22 Lithuania 29580 C 235 235
23 Lithuania 29581 T 235 235
24 Lithuania 29582 T 235 235
25 Lithuania 29583 T 235 235
26 Lithuania 29584 T 235 235
27 Lithuania 29585 C 235 235
28 Lithuania 29586 C 235 235
29 Lithuania 29587 G 235 235
30 Lithuania 29588 T 235 235
31 Lithuania 29589 T 235 235
32 Lithuania 29590 T 235 235
33 Lithuania 29591 A 235 235
34 Lithuania 29592 C 235 235
35 Lithuania 29593 G 235 235
36 Lithuania 29594 A 235 235
37 Lithuania 29595 T 235 235
38 Lithuania 29596 A 235 235
39 Lithuania 29597 T 235 235
40 Lithuania 29598 A 235 235
41 Lithuania 29599 T 235 235
42 Lithuania 29600 A 235 235
43 Lithuania 29601 G 235 235
44 Lithuania 29602 T 235 235
45 Lithuania 29603 C 235 235
46 Lithuania 29604 T 235 235
47 Lithuania 29605 A 235 235
48 Lithuania 29606 C 235 235
49 Lithuania 29607 T 235 235
50 Lithuania 29608 C 235 235
51 Lithuania 29609 T 235 235
52 Lithuania 29610 T 235 235
53 Lithuania 29611 G 235 235
54 Lithuania 29612 T 235 235
55 Lithuania 29613 G 235 235
56 Lithuania 29614 C 235 235
57 Lithuania 29615 A 235 235
58 Lithuania 29616 G 235 235
59 Lithuania 29617 A 235 235
60 Lithuania 29618 A 235 235
61 Lithuania 29619 T 235 235
62 Lithuania 29620 G 235 235
63 Lithuania 29621 A 235 235
64 Lithuania 29622 A 235 235
65 Lithuania 29623 T 235 235
66 Lithuania 29624 T 235 235
67 Lithuania 29625 C 235 235
68 Lithuania 29626 T 235 235
69 Lithuania 29627 C 235 235
70 Lithuania 29628 G 235 235
71 Lithuania 29629 T 235 235
72 Lithuania 29630 A 235 235
73 Lithuania 29631 A 235 235
74 Lithuania 29632 C 235 235
75 Lithuania 29633 T 235 235
76 Lithuania 29634 A 235 235
77 Lithuania 29635 C 235 235
78 Lithuania 29636 A 235 235
79 Lithuania 29637 T 235 235
80 Lithuania 29638 A 235 235
81 Lithuania 29639 G 235 235
82 Lithuania 29640 C 235 235
83 Lithuania 29641 A 235 235
84 Lithuania 29642 C T 235 234 Gln29*
85 Lithuania 29643 A 234 234
86 Lithuania 29644 A 234 234
87 Lithuania 29645 G T 234 167 Val30Leu
88 Lithuania 29646 T 234 234
89 Lithuania 29647 A 234 234
90 Lithuania 29648 G T 234 231 Asp31Tyr
91 Lithuania 29649 A 234 234
92 Lithuania 29650 T 234 234
93 Lithuania 29651 G 234 234
94 Lithuania 29652 T 234 234
95 Lithuania 29653 A 234 234
96 Lithuania 29654 G 234 234
97 Lithuania 29655 T 234 234
98 Lithuania 29656 T 234 234
99 Lithuania 29657 A 234 234
100 Lithuania 29658 A 234 234
101 Lithuania 29659 C 234 234
102 Lithuania 29660 T 234 234
103 Lithuania 29661 T 234 234
104 Lithuania 29662 T 234 234
105 Lithuania 29663 A 234 234
106 Lithuania 29664 A 234 234
107 Lithuania 29665 T 234 234
108 Lithuania 29666 C 233 233
109 Lithuania 29667 T 233 233
110 Lithuania 29668 C 233 233
111 Lithuania 29669 A 233 233
112 Lithuania 29670 C 233 233
113 Lithuania 29671 A 233 233
114 Lithuania 29672 T 233 233
115 Lithuania 29673 A 233 233
116 Lithuania 29674 G 233 233