National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Liechtenstein 29558 A 3 3
1 Liechtenstein 29559 T 3 3
2 Liechtenstein 29560 G 3 3
3 Liechtenstein 29561 G 3 3
4 Liechtenstein 29562 G 3 3
5 Liechtenstein 29563 C 3 3
6 Liechtenstein 29564 T 3 3
7 Liechtenstein 29565 A 3 3
8 Liechtenstein 29566 T 3 3
9 Liechtenstein 29567 A 3 3
10 Liechtenstein 29568 T 3 3
11 Liechtenstein 29569 A 3 3
12 Liechtenstein 29570 A 3 3
13 Liechtenstein 29571 A 3 3
14 Liechtenstein 29572 C 3 3
15 Liechtenstein 29573 G 3 3
16 Liechtenstein 29574 T 3 3
17 Liechtenstein 29575 T 3 3
18 Liechtenstein 29576 T 3 3
19 Liechtenstein 29577 T 3 3
20 Liechtenstein 29578 C 3 3
21 Liechtenstein 29579 G 3 3
22 Liechtenstein 29580 C 3 3
23 Liechtenstein 29581 T 3 3
24 Liechtenstein 29582 T 3 3
25 Liechtenstein 29583 T 3 3
26 Liechtenstein 29584 T 3 3
27 Liechtenstein 29585 C 3 3
28 Liechtenstein 29586 C 3 3
29 Liechtenstein 29587 G 3 3
30 Liechtenstein 29588 T 3 3
31 Liechtenstein 29589 T 3 3
32 Liechtenstein 29590 T 3 3
33 Liechtenstein 29591 A 3 3
34 Liechtenstein 29592 C 3 3
35 Liechtenstein 29593 G 3 3
36 Liechtenstein 29594 A 3 3
37 Liechtenstein 29595 T 3 3
38 Liechtenstein 29596 A 3 3
39 Liechtenstein 29597 T 3 3
40 Liechtenstein 29598 A 3 3
41 Liechtenstein 29599 T 3 3
42 Liechtenstein 29600 A 3 3
43 Liechtenstein 29601 G 3 3
44 Liechtenstein 29602 T 3 3
45 Liechtenstein 29603 C 3 3
46 Liechtenstein 29604 T 3 3
47 Liechtenstein 29605 A 3 3
48 Liechtenstein 29606 C 3 3
49 Liechtenstein 29607 T 3 3
50 Liechtenstein 29608 C 3 3
51 Liechtenstein 29609 T 3 3
52 Liechtenstein 29610 T 3 3
53 Liechtenstein 29611 G 3 3
54 Liechtenstein 29612 T 3 3
55 Liechtenstein 29613 G 3 3
56 Liechtenstein 29614 C 3 3
57 Liechtenstein 29615 A 3 3
58 Liechtenstein 29616 G 3 3
59 Liechtenstein 29617 A 3 3
60 Liechtenstein 29618 A 3 3
61 Liechtenstein 29619 T 3 3
62 Liechtenstein 29620 G 3 3
63 Liechtenstein 29621 A 3 3
64 Liechtenstein 29622 A 3 3
65 Liechtenstein 29623 T 3 3
66 Liechtenstein 29624 T 3 3
67 Liechtenstein 29625 C 3 3
68 Liechtenstein 29626 T 3 3
69 Liechtenstein 29627 C 3 3
70 Liechtenstein 29628 G 3 3
71 Liechtenstein 29629 T 3 3
72 Liechtenstein 29630 A 3 3
73 Liechtenstein 29631 A 3 3
74 Liechtenstein 29632 C 3 3
75 Liechtenstein 29633 T 3 3
76 Liechtenstein 29634 A 3 3
77 Liechtenstein 29635 C 3 3
78 Liechtenstein 29636 A 3 3
79 Liechtenstein 29637 T 3 3
80 Liechtenstein 29638 A 3 3
81 Liechtenstein 29639 G 3 3
82 Liechtenstein 29640 C 3 3
83 Liechtenstein 29641 A 3 3
84 Liechtenstein 29642 C 3 3
85 Liechtenstein 29643 A 3 3
86 Liechtenstein 29644 A 3 3
87 Liechtenstein 29645 G 3 3
88 Liechtenstein 29646 T 3 3
89 Liechtenstein 29647 A 3 3
90 Liechtenstein 29648 G 3 3
91 Liechtenstein 29649 A 3 3
92 Liechtenstein 29650 T 3 3
93 Liechtenstein 29651 G 3 3
94 Liechtenstein 29652 T 3 3
95 Liechtenstein 29653 A 3 3
96 Liechtenstein 29654 G 3 3
97 Liechtenstein 29655 T 3 3
98 Liechtenstein 29656 T 3 3
99 Liechtenstein 29657 A 3 3
100 Liechtenstein 29658 A 3 3
101 Liechtenstein 29659 C 3 3
102 Liechtenstein 29660 T 3 3
103 Liechtenstein 29661 T 3 3
104 Liechtenstein 29662 T 3 3
105 Liechtenstein 29663 A 3 3
106 Liechtenstein 29664 A 3 3
107 Liechtenstein 29665 T 3 3
108 Liechtenstein 29666 C 3 3
109 Liechtenstein 29667 T 3 3
110 Liechtenstein 29668 C 3 3
111 Liechtenstein 29669 A 3 3
112 Liechtenstein 29670 C 3 3
113 Liechtenstein 29671 A 3 3
114 Liechtenstein 29672 T 3 3
115 Liechtenstein 29673 A 3 3
116 Liechtenstein 29674 G 3 3