National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Lebanon 29558 A 22 22
1 Lebanon 29559 T 22 22
2 Lebanon 29560 G 22 22
3 Lebanon 29561 G 22 22
4 Lebanon 29562 G 22 22
5 Lebanon 29563 C 22 22
6 Lebanon 29564 T 22 22
7 Lebanon 29565 A 22 22
8 Lebanon 29566 T 22 22
9 Lebanon 29567 A 22 22
10 Lebanon 29568 T 22 22
11 Lebanon 29569 A 22 22
12 Lebanon 29570 A 22 22
13 Lebanon 29571 A 22 22
14 Lebanon 29572 C 22 22
15 Lebanon 29573 G 22 22
16 Lebanon 29574 T 22 22
17 Lebanon 29575 T 22 22
18 Lebanon 29576 T 22 22
19 Lebanon 29577 T 22 22
20 Lebanon 29578 C 22 22
21 Lebanon 29579 G 22 22
22 Lebanon 29580 C 22 22
23 Lebanon 29581 T 22 22
24 Lebanon 29582 T 22 22
25 Lebanon 29583 T 22 22
26 Lebanon 29584 T 22 22
27 Lebanon 29585 C 22 22
28 Lebanon 29586 C 22 22
29 Lebanon 29587 G 22 22
30 Lebanon 29588 T 22 22
31 Lebanon 29589 T 22 22
32 Lebanon 29590 T 22 22
33 Lebanon 29591 A 22 22
34 Lebanon 29592 C 22 22
35 Lebanon 29593 G 22 22
36 Lebanon 29594 A 22 22
37 Lebanon 29595 T 22 22
38 Lebanon 29596 A 22 22
39 Lebanon 29597 T 22 22
40 Lebanon 29598 A 22 22
41 Lebanon 29599 T 22 22
42 Lebanon 29600 A 22 22
43 Lebanon 29601 G 22 22
44 Lebanon 29602 T 22 22
45 Lebanon 29603 C 22 22
46 Lebanon 29604 T 22 22
47 Lebanon 29605 A 22 22
48 Lebanon 29606 C 22 22
49 Lebanon 29607 T 22 22
50 Lebanon 29608 C 22 22
51 Lebanon 29609 T 22 22
52 Lebanon 29610 T 22 22
53 Lebanon 29611 G 22 22
54 Lebanon 29612 T 22 22
55 Lebanon 29613 G 22 22
56 Lebanon 29614 C 22 22
57 Lebanon 29615 A 22 22
58 Lebanon 29616 G 22 22
59 Lebanon 29617 A 22 22
60 Lebanon 29618 A 22 22
61 Lebanon 29619 T 22 22
62 Lebanon 29620 G 22 22
63 Lebanon 29621 A 22 22
64 Lebanon 29622 A 22 22
65 Lebanon 29623 T 22 22
66 Lebanon 29624 T 22 22
67 Lebanon 29625 C 22 22
68 Lebanon 29626 T 22 22
69 Lebanon 29627 C 22 22
70 Lebanon 29628 G 22 22
71 Lebanon 29629 T 22 22
72 Lebanon 29630 A 22 22
73 Lebanon 29631 A 22 22
74 Lebanon 29632 C 22 22
75 Lebanon 29633 T 22 22
76 Lebanon 29634 A 22 22
77 Lebanon 29635 C 22 22
78 Lebanon 29636 A 22 22
79 Lebanon 29637 T 22 22
80 Lebanon 29638 A 22 22
81 Lebanon 29639 G 22 22
82 Lebanon 29640 C 22 22
83 Lebanon 29641 A 22 22
84 Lebanon 29642 C 22 22
85 Lebanon 29643 A 22 22
86 Lebanon 29644 A 22 22
87 Lebanon 29645 G 22 22
88 Lebanon 29646 T 22 22
89 Lebanon 29647 A 22 22
90 Lebanon 29648 G 22 22
91 Lebanon 29649 A 22 22
92 Lebanon 29650 T 22 22
93 Lebanon 29651 G 22 22
94 Lebanon 29652 T 22 22
95 Lebanon 29653 A 22 22
96 Lebanon 29654 G 22 22
97 Lebanon 29655 T 22 22
98 Lebanon 29656 T 22 22
99 Lebanon 29657 A 22 22
100 Lebanon 29658 A 22 22
101 Lebanon 29659 C 22 22
102 Lebanon 29660 T 22 22
103 Lebanon 29661 T 22 22
104 Lebanon 29662 T 22 22
105 Lebanon 29663 A 22 22
106 Lebanon 29664 A 22 22
107 Lebanon 29665 T 22 22
108 Lebanon 29666 C 22 22
109 Lebanon 29667 T 22 22
110 Lebanon 29668 C 22 22
111 Lebanon 29669 A 22 22
112 Lebanon 29670 C 22 22
113 Lebanon 29671 A 22 22
114 Lebanon 29672 T 22 22
115 Lebanon 29673 A 22 22
116 Lebanon 29674 G 22 22