National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Latvia 29558 A 233 233
1 Latvia 29559 T 233 233
2 Latvia 29560 G 233 233
3 Latvia 29561 G 233 233
4 Latvia 29562 G 233 233
5 Latvia 29563 C 233 233
6 Latvia 29564 T 233 233
7 Latvia 29565 A 233 233
8 Latvia 29566 T 233 233
9 Latvia 29567 A 233 233
10 Latvia 29568 T 233 233
11 Latvia 29569 A 233 233
12 Latvia 29570 A 233 233
13 Latvia 29571 A 233 233
14 Latvia 29572 C 233 233
15 Latvia 29573 G 233 233
16 Latvia 29574 T 233 233
17 Latvia 29575 T 233 233
18 Latvia 29576 T 233 233
19 Latvia 29577 T 233 233
20 Latvia 29578 C 233 233
21 Latvia 29579 G 233 233
22 Latvia 29580 C 233 233
23 Latvia 29581 T 233 233
24 Latvia 29582 T 233 233
25 Latvia 29583 T 233 233
26 Latvia 29584 T 233 233
27 Latvia 29585 C 233 233
28 Latvia 29586 C 233 233
29 Latvia 29587 G 233 233
30 Latvia 29588 T 233 233
31 Latvia 29589 T 233 233
32 Latvia 29590 T 233 233
33 Latvia 29591 A 233 233
34 Latvia 29592 C 233 233
35 Latvia 29593 G 233 233
36 Latvia 29594 A 233 233
37 Latvia 29595 T 233 233
38 Latvia 29596 A 233 233
39 Latvia 29597 T 233 233
40 Latvia 29598 A 233 233
41 Latvia 29599 T 233 233
42 Latvia 29600 A 233 233
43 Latvia 29601 G 233 233
44 Latvia 29602 T 233 233
45 Latvia 29603 C 233 233
46 Latvia 29604 T 233 233
47 Latvia 29605 A 233 233
48 Latvia 29606 C 233 233
49 Latvia 29607 T 233 233
50 Latvia 29608 C 233 233
51 Latvia 29609 T 233 233
52 Latvia 29610 T 233 233
53 Latvia 29611 G 233 233
54 Latvia 29612 T 233 233
55 Latvia 29613 G 233 233
56 Latvia 29614 C 233 233
57 Latvia 29615 A 233 233
58 Latvia 29616 G 233 233
59 Latvia 29617 A 233 233
60 Latvia 29618 A 233 233
61 Latvia 29619 T 233 233
62 Latvia 29620 G 233 233
63 Latvia 29621 A 233 233
64 Latvia 29622 A 233 233
65 Latvia 29623 T 233 233
66 Latvia 29624 T 233 233
67 Latvia 29625 C 233 233
68 Latvia 29626 T 233 233
69 Latvia 29627 C 233 233
70 Latvia 29628 G 233 233
71 Latvia 29629 T 233 233
72 Latvia 29630 A 233 233
73 Latvia 29631 A 233 233
74 Latvia 29632 C 233 233
75 Latvia 29633 T 233 233
76 Latvia 29634 A 233 233
77 Latvia 29635 C 233 233
78 Latvia 29636 A 233 233
79 Latvia 29637 T 233 233
80 Latvia 29638 A 233 233
81 Latvia 29639 G 233 233
82 Latvia 29640 C 233 233
83 Latvia 29641 A 233 233
84 Latvia 29642 C 233 233
85 Latvia 29643 A 233 233
86 Latvia 29644 A 233 233
87 Latvia 29645 G T 233 212 Val30Leu
88 Latvia 29646 T 233 233
89 Latvia 29647 A 233 233
90 Latvia 29648 G 233 233
91 Latvia 29649 A 233 233
92 Latvia 29650 T 233 233
93 Latvia 29651 G 233 233
94 Latvia 29652 T 233 233
95 Latvia 29653 A 233 233
96 Latvia 29654 G 233 233
97 Latvia 29655 T 233 233
98 Latvia 29656 T 233 233
99 Latvia 29657 A 233 233
100 Latvia 29658 A 233 233
101 Latvia 29659 C 233 233
102 Latvia 29660 T 233 233
103 Latvia 29661 T 233 233
104 Latvia 29662 T 233 233
105 Latvia 29663 A 233 233
106 Latvia 29664 A 233 233
107 Latvia 29665 T 233 233
108 Latvia 29666 C 233 233
109 Latvia 29667 T 233 233
110 Latvia 29668 C 233 233
111 Latvia 29669 A 233 233
112 Latvia 29670 C 233 233
113 Latvia 29671 A 233 233
114 Latvia 29672 T 233 233
115 Latvia 29673 A 233 233
116 Latvia 29674 G 233 233