National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Kuwait 29558 A 8 8
1 Kuwait 29559 T 8 8
2 Kuwait 29560 G 8 8
3 Kuwait 29561 G 8 8
4 Kuwait 29562 G 8 8
5 Kuwait 29563 C 8 8
6 Kuwait 29564 T 8 8
7 Kuwait 29565 A 8 8
8 Kuwait 29566 T 8 8
9 Kuwait 29567 A 8 8
10 Kuwait 29568 T 8 8
11 Kuwait 29569 A 8 8
12 Kuwait 29570 A 8 8
13 Kuwait 29571 A 8 8
14 Kuwait 29572 C 8 8
15 Kuwait 29573 G 8 8
16 Kuwait 29574 T 8 8
17 Kuwait 29575 T 8 8
18 Kuwait 29576 T 8 8
19 Kuwait 29577 T 8 8
20 Kuwait 29578 C 8 8
21 Kuwait 29579 G 8 8
22 Kuwait 29580 C 8 8
23 Kuwait 29581 T 8 8
24 Kuwait 29582 T 8 8
25 Kuwait 29583 T 8 8
26 Kuwait 29584 T 8 8
27 Kuwait 29585 C 8 8
28 Kuwait 29586 C 8 8
29 Kuwait 29587 G 8 8
30 Kuwait 29588 T 8 8
31 Kuwait 29589 T 8 8
32 Kuwait 29590 T 8 8
33 Kuwait 29591 A 8 8
34 Kuwait 29592 C 8 8
35 Kuwait 29593 G 8 8
36 Kuwait 29594 A 8 8
37 Kuwait 29595 T 8 8
38 Kuwait 29596 A 8 8
39 Kuwait 29597 T 8 8
40 Kuwait 29598 A 8 8
41 Kuwait 29599 T 8 8
42 Kuwait 29600 A 8 8
43 Kuwait 29601 G 8 8
44 Kuwait 29602 T 8 8
45 Kuwait 29603 C 8 8
46 Kuwait 29604 T 8 8
47 Kuwait 29605 A 8 8
48 Kuwait 29606 C 8 8
49 Kuwait 29607 T 8 8
50 Kuwait 29608 C 8 8
51 Kuwait 29609 T 8 8
52 Kuwait 29610 T 8 8
53 Kuwait 29611 G 8 8
54 Kuwait 29612 T 8 8
55 Kuwait 29613 G 8 8
56 Kuwait 29614 C 8 8
57 Kuwait 29615 A 8 8
58 Kuwait 29616 G 8 8
59 Kuwait 29617 A 8 8
60 Kuwait 29618 A 8 8
61 Kuwait 29619 T 8 8
62 Kuwait 29620 G 8 8
63 Kuwait 29621 A 8 8
64 Kuwait 29622 A 8 8
65 Kuwait 29623 T 8 8
66 Kuwait 29624 T 8 8
67 Kuwait 29625 C 8 8
68 Kuwait 29626 T 8 8
69 Kuwait 29627 C 8 8
70 Kuwait 29628 G 8 8
71 Kuwait 29629 T 8 8
72 Kuwait 29630 A 8 8
73 Kuwait 29631 A 8 8
74 Kuwait 29632 C 8 8
75 Kuwait 29633 T 8 8
76 Kuwait 29634 A 8 8
77 Kuwait 29635 C 8 8
78 Kuwait 29636 A 8 8
79 Kuwait 29637 T 8 8
80 Kuwait 29638 A 8 8
81 Kuwait 29639 G 8 8
82 Kuwait 29640 C 8 8
83 Kuwait 29641 A 8 8
84 Kuwait 29642 C 8 8
85 Kuwait 29643 A 8 8
86 Kuwait 29644 A 8 8
87 Kuwait 29645 G 8 8
88 Kuwait 29646 T 8 8
89 Kuwait 29647 A 8 8
90 Kuwait 29648 G 8 8
91 Kuwait 29649 A 8 8
92 Kuwait 29650 T 8 8
93 Kuwait 29651 G 8 8
94 Kuwait 29652 T 8 8
95 Kuwait 29653 A 8 8
96 Kuwait 29654 G 8 8
97 Kuwait 29655 T 8 8
98 Kuwait 29656 T 8 8
99 Kuwait 29657 A 8 8
100 Kuwait 29658 A 8 8
101 Kuwait 29659 C 8 8
102 Kuwait 29660 T 8 8
103 Kuwait 29661 T 8 8
104 Kuwait 29662 T 8 8
105 Kuwait 29663 A 8 8
106 Kuwait 29664 A 8 8
107 Kuwait 29665 T 8 8
108 Kuwait 29666 C 8 8
109 Kuwait 29667 T 8 8
110 Kuwait 29668 C 8 8
111 Kuwait 29669 A 8 8
112 Kuwait 29670 C 8 8
113 Kuwait 29671 A 8 8
114 Kuwait 29672 T 8 8
115 Kuwait 29673 A 8 8
116 Kuwait 29674 G 8 8