National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             1  
C     3   1                            
D     3                                
F     12       1                 1      
G     3                                
I     9                                
L     12                                
M     6           1                    
N     16                                
P     3                                
Q     3                                
R     6   1         1                  
S     6       1                        
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Kenya 29558 A 500 500
1 Kenya 29559 T 500 500
2 Kenya 29560 G 500 500
3 Kenya 29561 G 500 500
4 Kenya 29562 G 500 500
5 Kenya 29563 C 500 500
6 Kenya 29564 T 500 500
7 Kenya 29565 A 500 500
8 Kenya 29566 T 500 500
9 Kenya 29567 A 500 500
10 Kenya 29568 T 500 500
11 Kenya 29569 A 500 500
12 Kenya 29570 A 500 500
13 Kenya 29571 A 500 500
14 Kenya 29572 C 500 500
15 Kenya 29573 G 500 500
16 Kenya 29574 T 500 500
17 Kenya 29575 T 500 500
18 Kenya 29576 T 500 500
19 Kenya 29577 T 500 500
20 Kenya 29578 C T 500 499 Phe7Phe
21 Kenya 29579 G 500 500
22 Kenya 29580 C 500 500
23 Kenya 29581 T 500 500
24 Kenya 29582 T 500 500
25 Kenya 29583 T 500 500
26 Kenya 29584 T 500 500
27 Kenya 29585 C 500 500
28 Kenya 29586 C 500 500
29 Kenya 29587 G 500 500
30 Kenya 29588 T 500 500
31 Kenya 29589 T 500 500
32 Kenya 29590 T 500 500
33 Kenya 29591 A 500 500
34 Kenya 29592 C 500 500
35 Kenya 29593 G 500 500
36 Kenya 29594 A 500 500
37 Kenya 29595 T 499 499
38 Kenya 29596 A 499 499
39 Kenya 29597 T 499 499
40 Kenya 29598 A 499 499
41 Kenya 29599 T 499 499
42 Kenya 29600 A 499 499
43 Kenya 29601 G 499 499
44 Kenya 29602 T 499 499
45 Kenya 29603 C 499 499
46 Kenya 29604 T 499 499
47 Kenya 29605 A 499 499
48 Kenya 29606 C 499 499
49 Kenya 29607 T 499 499
50 Kenya 29608 C 499 499
51 Kenya 29609 T 499 499
52 Kenya 29610 T 499 499
53 Kenya 29611 G 499 499
54 Kenya 29612 T 499 499
55 Kenya 29613 G 499 499
56 Kenya 29614 C T 499 498 Cys19Cys
57 Kenya 29615 A 499 499
58 Kenya 29616 G 499 499
59 Kenya 29617 A 499 499
60 Kenya 29618 A 499 499
61 Kenya 29619 T 499 499
62 Kenya 29620 G C 499 498 Met21Ile
63 Kenya 29621 A 499 499
64 Kenya 29622 A 499 499
65 Kenya 29623 T 499 499
66 Kenya 29624 T 499 499
67 Kenya 29625 C T 499 498 Ser23Phe
68 Kenya 29626 T 499 499
69 Kenya 29627 C T 499 498 Arg24Cys
70 Kenya 29628 G T 499 497 Arg24Leu
71 Kenya 29629 T 499 499
72 Kenya 29630 A 499 499
73 Kenya 29631 A 499 499
74 Kenya 29632 C 499 499
75 Kenya 29633 T 499 499
76 Kenya 29634 A 499 499
77 Kenya 29635 C 499 499
78 Kenya 29636 A 499 499
79 Kenya 29637 T 499 499
80 Kenya 29638 A 499 499
81 Kenya 29639 G 499 499
82 Kenya 29640 C T 499 498 Ala28Val
83 Kenya 29641 A 499 499
84 Kenya 29642 C 499 499
85 Kenya 29643 A 499 499
86 Kenya 29644 A 499 499
87 Kenya 29645 G T 499 497 Val30Leu
88 Kenya 29646 T 499 499
89 Kenya 29647 A 499 499
90 Kenya 29648 G 499 499
91 Kenya 29649 A 499 499
92 Kenya 29650 T 499 499
93 Kenya 29651 G 499 499
94 Kenya 29652 T 499 499
95 Kenya 29653 A 499 499
96 Kenya 29654 G 499 499
97 Kenya 29655 T 499 499
98 Kenya 29656 T 499 499
99 Kenya 29657 A 499 499
100 Kenya 29658 A 499 499
101 Kenya 29659 C 499 499
102 Kenya 29660 T 499 499
103 Kenya 29661 T C 499 498 Phe35Ser
104 Kenya 29662 T 499 499
105 Kenya 29663 A 499 499
106 Kenya 29664 A 499 499
107 Kenya 29665 T 499 499
108 Kenya 29666 C 481 481
109 Kenya 29667 T 481 481
110 Kenya 29668 C 481 480
111 Kenya 29669 A 481 480
112 Kenya 29670 C 481 481
113 Kenya 29671 A 481 481
114 Kenya 29672 T 481 481
115 Kenya 29673 A 481 481
116 Kenya 29674 G 479 479