National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                               1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Kazakhstan 29558 A 53 53
1 Kazakhstan 29559 T 53 53
2 Kazakhstan 29560 G 53 53
3 Kazakhstan 29561 G 53 53
4 Kazakhstan 29562 G 53 53
5 Kazakhstan 29563 C 53 53
6 Kazakhstan 29564 T 53 53
7 Kazakhstan 29565 A 53 53
8 Kazakhstan 29566 T 53 53
9 Kazakhstan 29567 A 53 53
10 Kazakhstan 29568 T 53 53
11 Kazakhstan 29569 A 53 53
12 Kazakhstan 29570 A 53 53
13 Kazakhstan 29571 A 53 53
14 Kazakhstan 29572 C 53 53
15 Kazakhstan 29573 G 53 53
16 Kazakhstan 29574 T 53 53
17 Kazakhstan 29575 T 53 53
18 Kazakhstan 29576 T 53 53
19 Kazakhstan 29577 T 53 53
20 Kazakhstan 29578 C 53 53
21 Kazakhstan 29579 G 53 53
22 Kazakhstan 29580 C 53 53
23 Kazakhstan 29581 T 53 53
24 Kazakhstan 29582 T 53 53
25 Kazakhstan 29583 T 53 53
26 Kazakhstan 29584 T 53 53
27 Kazakhstan 29585 C 53 53
28 Kazakhstan 29586 C 53 53
29 Kazakhstan 29587 G 53 53
30 Kazakhstan 29588 T 53 53
31 Kazakhstan 29589 T 53 53
32 Kazakhstan 29590 T 53 53
33 Kazakhstan 29591 A 53 53
34 Kazakhstan 29592 C 53 53
35 Kazakhstan 29593 G 53 53
36 Kazakhstan 29594 A 53 53
37 Kazakhstan 29595 T 53 53
38 Kazakhstan 29596 A 53 53
39 Kazakhstan 29597 T 53 53
40 Kazakhstan 29598 A 53 53
41 Kazakhstan 29599 T 53 53
42 Kazakhstan 29600 A 53 53
43 Kazakhstan 29601 G 53 53
44 Kazakhstan 29602 T 53 53
45 Kazakhstan 29603 C 53 53
46 Kazakhstan 29604 T 53 53
47 Kazakhstan 29605 A 53 53
48 Kazakhstan 29606 C 53 53
49 Kazakhstan 29607 T 53 53
50 Kazakhstan 29608 C 53 53
51 Kazakhstan 29609 T 53 53
52 Kazakhstan 29610 T 53 53
53 Kazakhstan 29611 G 53 53
54 Kazakhstan 29612 T 53 53
55 Kazakhstan 29613 G 53 53
56 Kazakhstan 29614 C 53 53
57 Kazakhstan 29615 A 53 53
58 Kazakhstan 29616 G 53 53
59 Kazakhstan 29617 A 53 53
60 Kazakhstan 29618 A 53 53
61 Kazakhstan 29619 T 53 53
62 Kazakhstan 29620 G 53 53
63 Kazakhstan 29621 A 53 53
64 Kazakhstan 29622 A 53 53
65 Kazakhstan 29623 T 53 53
66 Kazakhstan 29624 T 53 53
67 Kazakhstan 29625 C 53 53
68 Kazakhstan 29626 T 53 53
69 Kazakhstan 29627 C 53 53
70 Kazakhstan 29628 G 53 53
71 Kazakhstan 29629 T 53 53
72 Kazakhstan 29630 A 53 53
73 Kazakhstan 29631 A 53 53
74 Kazakhstan 29632 C 53 53
75 Kazakhstan 29633 T 53 53
76 Kazakhstan 29634 A 53 53
77 Kazakhstan 29635 C T 53 52 Tyr26Tyr
78 Kazakhstan 29636 A 53 53
79 Kazakhstan 29637 T 53 53
80 Kazakhstan 29638 A 53 53
81 Kazakhstan 29639 G 53 53
82 Kazakhstan 29640 C 53 53
83 Kazakhstan 29641 A 53 53
84 Kazakhstan 29642 C 53 53
85 Kazakhstan 29643 A 53 53
86 Kazakhstan 29644 A 53 53
87 Kazakhstan 29645 G 53 53
88 Kazakhstan 29646 T 53 53
89 Kazakhstan 29647 A 53 53
90 Kazakhstan 29648 G 53 53
91 Kazakhstan 29649 A 53 53
92 Kazakhstan 29650 T 53 53
93 Kazakhstan 29651 G 53 53
94 Kazakhstan 29652 T 53 53
95 Kazakhstan 29653 A 53 53
96 Kazakhstan 29654 G 53 53
97 Kazakhstan 29655 T 53 53
98 Kazakhstan 29656 T 53 53
99 Kazakhstan 29657 A 53 53
100 Kazakhstan 29658 A 53 53
101 Kazakhstan 29659 C 53 53
102 Kazakhstan 29660 T 53 53
103 Kazakhstan 29661 T 53 53
104 Kazakhstan 29662 T 53 53
105 Kazakhstan 29663 A 53 53
106 Kazakhstan 29664 A 53 53
107 Kazakhstan 29665 T 53 53
108 Kazakhstan 29666 C 53 53
109 Kazakhstan 29667 T 53 53
110 Kazakhstan 29668 C 53 53
111 Kazakhstan 29669 A 53 53
112 Kazakhstan 29670 C 53 53
113 Kazakhstan 29671 A 53 53
114 Kazakhstan 29672 T 53 53
115 Kazakhstan 29673 A 53 53
116 Kazakhstan 29674 G 53 53