National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12       1                        
M     6                                
N     16                                
P     3                   1            
Q     3                                
R     6                                
S     6       1                        
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jordan 29558 A 579 579
1 Jordan 29559 T 579 579
2 Jordan 29560 G 579 579
3 Jordan 29561 G 579 579
4 Jordan 29562 G 579 579
5 Jordan 29563 C 579 579
6 Jordan 29564 T 579 579
7 Jordan 29565 A 579 579
8 Jordan 29566 T 579 579
9 Jordan 29567 A 579 579
10 Jordan 29568 T 579 579
11 Jordan 29569 A 579 579
12 Jordan 29570 A 579 579
13 Jordan 29571 A 579 579
14 Jordan 29572 C 579 579
15 Jordan 29573 G 579 579
16 Jordan 29574 T 579 579
17 Jordan 29575 T 579 579
18 Jordan 29576 T 579 579
19 Jordan 29577 T 579 579
20 Jordan 29578 C 579 579
21 Jordan 29579 G 579 579
22 Jordan 29580 C 579 579
23 Jordan 29581 T 579 579
24 Jordan 29582 T 579 579
25 Jordan 29583 T 579 579
26 Jordan 29584 T 579 579
27 Jordan 29585 C 579 579
28 Jordan 29586 C 579 579
29 Jordan 29587 G T 579 578 Pro10Pro
30 Jordan 29588 T 579 579
31 Jordan 29589 T 579 579
32 Jordan 29590 T 579 579
33 Jordan 29591 A 579 579
34 Jordan 29592 C 579 579
35 Jordan 29593 G 579 579
36 Jordan 29594 A 579 579
37 Jordan 29595 T 579 578
38 Jordan 29596 A 579 579
39 Jordan 29597 T 579 579
40 Jordan 29598 A 579 579
41 Jordan 29599 T 579 579
42 Jordan 29600 A 579 579
43 Jordan 29601 G 579 579
44 Jordan 29602 T 579 579
45 Jordan 29603 C 579 579
46 Jordan 29604 T 579 579
47 Jordan 29605 A 579 579
48 Jordan 29606 C 579 579
49 Jordan 29607 T 579 579
50 Jordan 29608 C 579 579
51 Jordan 29609 T 579 579
52 Jordan 29610 T 579 579
53 Jordan 29611 G 579 579
54 Jordan 29612 T 579 579
55 Jordan 29613 G 579 579
56 Jordan 29614 C 579 579
57 Jordan 29615 A 579 579
58 Jordan 29616 G 579 579
59 Jordan 29617 A 579 579
60 Jordan 29618 A 579 579
61 Jordan 29619 T 579 579
62 Jordan 29620 G 579 579
63 Jordan 29621 A 579 579
64 Jordan 29622 A 579 579
65 Jordan 29623 T 579 579
66 Jordan 29624 T 579 579
67 Jordan 29625 C T 579 578 Ser23Phe
68 Jordan 29626 T 579 579
69 Jordan 29627 C 579 579
70 Jordan 29628 G 579 579
71 Jordan 29629 T 579 579
72 Jordan 29630 A 579 579
73 Jordan 29631 A 579 579
74 Jordan 29632 C 579 579
75 Jordan 29633 T 579 579
76 Jordan 29634 A 579 579
77 Jordan 29635 C 579 579
78 Jordan 29636 A 579 579
79 Jordan 29637 T 579 579
80 Jordan 29638 A 579 579
81 Jordan 29639 G 579 579
82 Jordan 29640 C 579 579
83 Jordan 29641 A 579 579
84 Jordan 29642 C 579 579
85 Jordan 29643 A 579 579
86 Jordan 29644 A 579 579
87 Jordan 29645 G T 579 577 Val30Leu
88 Jordan 29646 T 579 579
89 Jordan 29647 A 579 579
90 Jordan 29648 G 579 579
91 Jordan 29649 A 579 579
92 Jordan 29650 T 579 579
93 Jordan 29651 G 579 579
94 Jordan 29652 T 579 579
95 Jordan 29653 A 579 579
96 Jordan 29654 G 579 579
97 Jordan 29655 T 579 579
98 Jordan 29656 T 579 579
99 Jordan 29657 A 579 579
100 Jordan 29658 A 579 579
101 Jordan 29659 C 579 579
102 Jordan 29660 T 579 579
103 Jordan 29661 T 579 579
104 Jordan 29662 T 579 579
105 Jordan 29663 A 579 579
106 Jordan 29664 A 579 579
107 Jordan 29665 T 579 579
108 Jordan 29666 C T 576 570 Leu37Phe
109 Jordan 29667 T 575 575
110 Jordan 29668 C 575 575
111 Jordan 29669 A 575 575
112 Jordan 29670 C 575 575
113 Jordan 29671 A 575 575
114 Jordan 29672 T 575 575
115 Jordan 29673 A 575 575
116 Jordan 29674 G 575 575