National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jamaica 29558 A 13 13
1 Jamaica 29559 T 13 13
2 Jamaica 29560 G 13 13
3 Jamaica 29561 G 13 13
4 Jamaica 29562 G 13 13
5 Jamaica 29563 C 13 13
6 Jamaica 29564 T 13 13
7 Jamaica 29565 A 13 13
8 Jamaica 29566 T 13 13
9 Jamaica 29567 A 13 13
10 Jamaica 29568 T 13 13
11 Jamaica 29569 A 13 13
12 Jamaica 29570 A 13 13
13 Jamaica 29571 A 13 13
14 Jamaica 29572 C 13 13
15 Jamaica 29573 G 13 13
16 Jamaica 29574 T 13 13
17 Jamaica 29575 T 13 13
18 Jamaica 29576 T 13 13
19 Jamaica 29577 T 13 13
20 Jamaica 29578 C 13 13
21 Jamaica 29579 G 13 13
22 Jamaica 29580 C 13 13
23 Jamaica 29581 T 13 13
24 Jamaica 29582 T 13 13
25 Jamaica 29583 T 13 13
26 Jamaica 29584 T 13 13
27 Jamaica 29585 C 13 13
28 Jamaica 29586 C 13 13
29 Jamaica 29587 G 13 13
30 Jamaica 29588 T 13 13
31 Jamaica 29589 T 13 13
32 Jamaica 29590 T 13 13
33 Jamaica 29591 A 13 13
34 Jamaica 29592 C 13 13
35 Jamaica 29593 G 13 13
36 Jamaica 29594 A 13 13
37 Jamaica 29595 T 13 13
38 Jamaica 29596 A 13 13
39 Jamaica 29597 T 13 13
40 Jamaica 29598 A 13 13
41 Jamaica 29599 T 13 13
42 Jamaica 29600 A 13 13
43 Jamaica 29601 G 13 13
44 Jamaica 29602 T 13 13
45 Jamaica 29603 C 13 13
46 Jamaica 29604 T 13 13
47 Jamaica 29605 A 13 13
48 Jamaica 29606 C 13 13
49 Jamaica 29607 T 13 13
50 Jamaica 29608 C 13 13
51 Jamaica 29609 T 13 13
52 Jamaica 29610 T 13 13
53 Jamaica 29611 G 13 13
54 Jamaica 29612 T 13 13
55 Jamaica 29613 G 13 13
56 Jamaica 29614 C 13 13
57 Jamaica 29615 A 13 13
58 Jamaica 29616 G 13 13
59 Jamaica 29617 A 13 13
60 Jamaica 29618 A 13 13
61 Jamaica 29619 T 13 13
62 Jamaica 29620 G 13 13
63 Jamaica 29621 A 13 13
64 Jamaica 29622 A 13 13
65 Jamaica 29623 T 13 13
66 Jamaica 29624 T 13 13
67 Jamaica 29625 C 13 13
68 Jamaica 29626 T 13 13
69 Jamaica 29627 C 13 13
70 Jamaica 29628 G 13 13
71 Jamaica 29629 T 13 13
72 Jamaica 29630 A 13 13
73 Jamaica 29631 A 13 13
74 Jamaica 29632 C 13 13
75 Jamaica 29633 T 13 13
76 Jamaica 29634 A 13 13
77 Jamaica 29635 C 13 13
78 Jamaica 29636 A 13 13
79 Jamaica 29637 T 13 13
80 Jamaica 29638 A 13 13
81 Jamaica 29639 G 13 13
82 Jamaica 29640 C 13 13
83 Jamaica 29641 A 13 13
84 Jamaica 29642 C 13 13
85 Jamaica 29643 A 13 13
86 Jamaica 29644 A 13 13
87 Jamaica 29645 G T 13 12 Val30Leu
88 Jamaica 29646 T 13 13
89 Jamaica 29647 A 13 13
90 Jamaica 29648 G 13 13
91 Jamaica 29649 A 13 13
92 Jamaica 29650 T 13 13
93 Jamaica 29651 G 13 13
94 Jamaica 29652 T 13 13
95 Jamaica 29653 A 13 13
96 Jamaica 29654 G 13 13
97 Jamaica 29655 T 13 13
98 Jamaica 29656 T 13 13
99 Jamaica 29657 A 13 13
100 Jamaica 29658 A 13 13
101 Jamaica 29659 C 13 13
102 Jamaica 29660 T 13 13
103 Jamaica 29661 T 13 13
104 Jamaica 29662 T 13 13
105 Jamaica 29663 A 13 13
106 Jamaica 29664 A 13 13
107 Jamaica 29665 T 13 13
108 Jamaica 29666 C 11 11
109 Jamaica 29667 T 11 11
110 Jamaica 29668 C 11 11
111 Jamaica 29669 A 11 11
112 Jamaica 29670 C 11 11
113 Jamaica 29671 A 11 11
114 Jamaica 29672 T 11 11
115 Jamaica 29673 A 11 11
116 Jamaica 29674 G 11 11