National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6 1                           1  
C     3   1                            
D     3                 1              
F     12                                
G     3                                
I     9                             1  
L     12       1                        
M     6                                
N     16                 1              
P     3                                
Q 1   3                                
R     6             1                  
S     6           1                    
T     6           1                    
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Italy 29558 A 2950 2950
1 Italy 29559 T 2950 2950
2 Italy 29560 G 2950 2949
3 Italy 29561 G 2950 2950
4 Italy 29562 G 2950 2950
5 Italy 29563 C 2950 2950
6 Italy 29564 T 2950 2950
7 Italy 29565 A 2950 2950
8 Italy 29566 T 2950 2950
9 Italy 29567 A G 2951 2946 Ile4Val
10 Italy 29568 T 2951 2951
11 Italy 29569 A 2951 2951
12 Italy 29570 A 2951 2951
13 Italy 29571 A 2951 2951
14 Italy 29572 C 2951 2951
15 Italy 29573 G 2951 2951
16 Italy 29574 T 2951 2951
17 Italy 29575 T 2951 2951
18 Italy 29576 T 2951 2951
19 Italy 29577 T 2951 2951
20 Italy 29578 C 2956 2956
21 Italy 29579 G 2956 2956
22 Italy 29580 C T 2956 2955 Ala8Val
23 Italy 29581 T C 2956 2955 Ala8Ala
24 Italy 29582 T 2956 2956
25 Italy 29583 T 2956 2956
26 Italy 29584 T 2956 2956
27 Italy 29585 C 2956 2956
28 Italy 29586 C 2956 2956
29 Italy 29587 G 2956 2956
30 Italy 29588 T 2956 2956
31 Italy 29589 T 2956 2956
32 Italy 29590 T 2956 2956
33 Italy 29591 A 2957 2957
34 Italy 29592 C 2957 2957
35 Italy 29593 G 2957 2957
36 Italy 29594 A 2957 2957
37 Italy 29595 T 2957 2957
38 Italy 29596 A 2957 2957
39 Italy 29597 T 2957 2957
40 Italy 29598 A 2957 2957
41 Italy 29599 T 2957 2957
42 Italy 29600 A 2957 2957
43 Italy 29601 G T 2957 2956 Ser15Ile
44 Italy 29602 T 2957 2957
45 Italy 29603 C 2957 2957
46 Italy 29604 T 2957 2957
47 Italy 29605 A 2957 2957
48 Italy 29606 C 2957 2957
49 Italy 29607 T 2957 2957
50 Italy 29608 C 2957 2957
51 Italy 29609 T 2957 2957
52 Italy 29610 T 2957 2957
53 Italy 29611 G 2957 2957
54 Italy 29612 T 2957 2957
55 Italy 29613 G 2957 2957
56 Italy 29614 C T 2957 2954 Cys19Cys
57 Italy 29615 A 2957 2957
58 Italy 29616 G 2957 2957
59 Italy 29617 A 2957 2957
60 Italy 29618 A 2958 2958
61 Italy 29619 T 2958 2958
62 Italy 29620 G 2958 2958
63 Italy 29621 A 2958 2958
64 Italy 29622 A 2958 2958
65 Italy 29623 T 2958 2958
66 Italy 29624 T 2958 2958
67 Italy 29625 C 2958 2958
68 Italy 29626 T 2958 2958
69 Italy 29627 C 2958 2958
70 Italy 29628 G T 2958 2956 Arg24Leu
71 Italy 29629 T 2958 2958
72 Italy 29630 A 2958 2958
73 Italy 29631 A 2958 2958
74 Italy 29632 C 2958 2958
75 Italy 29633 T 2958 2958
76 Italy 29634 A 2958 2958
77 Italy 29635 C 2958 2958
78 Italy 29636 A 2958 2958
79 Italy 29637 T 2958 2958
80 Italy 29638 A 2958 2958
81 Italy 29639 G 2958 2958
82 Italy 29640 C 2958 2958
83 Italy 29641 A 2958 2958
84 Italy 29642 C T 2958 2954 Gln29*
85 Italy 29643 A 2958 2958
86 Italy 29644 A 2958 2958
87 Italy 29645 G T 2958 2049 Val30Leu
88 Italy 29646 T 2958 2958
89 Italy 29647 A 2958 2956
90 Italy 29648 G A 2958 2957 Asp31Asn
91 Italy 29649 A 2958 2958
92 Italy 29650 T 2958 2958
93 Italy 29651 G 2958 2958
94 Italy 29652 T 2958 2958
95 Italy 29653 A 2958 2958
96 Italy 29654 G 2958 2958
97 Italy 29655 T 2958 2958
98 Italy 29656 T 2958 2958
99 Italy 29657 A 2958 2958
100 Italy 29658 A 2958 2958
101 Italy 29659 C 2958 2958
102 Italy 29660 T 2957 2957
103 Italy 29661 T 2957 2957
104 Italy 29662 T 2957 2957
105 Italy 29663 A 2957 2957
106 Italy 29664 A 2957 2957
107 Italy 29665 T C 2957 2954 Asn36Asn
108 Italy 29666 C T 2957 2955 Leu37Phe
109 Italy 29667 T 2957 2957
110 Italy 29668 C 2953 2952
111 Italy 29669 A 2953 2953
112 Italy 29670 C T 2953 2952 Thr38Ile
113 Italy 29671 A 2953 2953
114 Italy 29672 T 2953 2953
115 Italy 29673 A 2953 2953
116 Italy 29674 G 2953 2953