National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G H I L M N P Q R S T V Y
*     2                                  
-     117                                  
?                                        
A     6                               2  
C     3   1                              
D     3                                  
F     12                                  
G     3                                  
H                                        
I     9                                  
L     12       1             1            
M     6                                  
N     16                                  
P     3                     1            
Q     3                                  
R     6         1 1                      
S     6       1                          
T     6                                  
V     12               1                  
Y     9                                 1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Ireland 29558 A 1970 1970
1 Ireland 29559 T 1970 1970
2 Ireland 29560 G 1970 1970
3 Ireland 29561 G 1970 1970
4 Ireland 29562 G 1970 1970
5 Ireland 29563 C 1970 1970
6 Ireland 29564 T 1970 1970
7 Ireland 29565 A 1970 1970
8 Ireland 29566 T 1970 1970
9 Ireland 29567 A 1970 1970
10 Ireland 29568 T 1970 1970
11 Ireland 29569 A 1970 1970
12 Ireland 29570 A 1970 1970
13 Ireland 29571 A 1970 1970
14 Ireland 29572 C 1970 1970
15 Ireland 29573 G 1970 1970
16 Ireland 29574 T 1970 1970
17 Ireland 29575 T 1970 1970
18 Ireland 29576 T 1970 1970
19 Ireland 29577 T 1970 1970
20 Ireland 29578 C 1970 1970
21 Ireland 29579 G 1970 1970
22 Ireland 29580 C T 1970 1968 Ala8Val
23 Ireland 29581 T 1970 1970
24 Ireland 29582 T 1970 1970
25 Ireland 29583 T 1970 1970
26 Ireland 29584 T 1970 1970
27 Ireland 29585 C 1970 1970
28 Ireland 29586 C 1970 1970
29 Ireland 29587 G T 1970 1969 Pro10Pro
30 Ireland 29588 T 1970 1970
31 Ireland 29589 T 1970 1970
32 Ireland 29590 T 1970 1970
33 Ireland 29591 A 1970 1970
34 Ireland 29592 C 1970 1970
35 Ireland 29593 G 1970 1969
36 Ireland 29594 A 1970 1969
37 Ireland 29595 T 1970 1969
38 Ireland 29596 A 1970 1970
39 Ireland 29597 T 1970 1970
40 Ireland 29598 A 1970 1970
41 Ireland 29599 T 1970 1970
42 Ireland 29600 A 1970 1970
43 Ireland 29601 G 1970 1970
44 Ireland 29602 T 1970 1970
45 Ireland 29603 C 1970 1970
46 Ireland 29604 T 1970 1970
47 Ireland 29605 A 1970 1970
48 Ireland 29606 C 1970 1970
49 Ireland 29607 T 1970 1970
50 Ireland 29608 C 1970 1970
51 Ireland 29609 T 1970 1970
52 Ireland 29610 T 1970 1970
53 Ireland 29611 G 1970 1970
54 Ireland 29612 T 1970 1970
55 Ireland 29613 G 1970 1970
56 Ireland 29614 C T 1970 1950 Cys19Cys
57 Ireland 29615 A 1970 1970
58 Ireland 29616 G 1970 1970
59 Ireland 29617 A 1970 1970
60 Ireland 29618 A 1970 1970
61 Ireland 29619 T 1970 1970
62 Ireland 29620 G 1970 1970
63 Ireland 29621 A 1970 1970
64 Ireland 29622 A 1970 1970
65 Ireland 29623 T 1970 1970
66 Ireland 29624 T 1970 1970
67 Ireland 29625 C T 1970 1969 Ser23Phe
68 Ireland 29626 T 1970 1970
69 Ireland 29627 C G 1970 1969 Arg24Gly
70 Ireland 29628 G A 1970 1969 Arg24His
71 Ireland 29629 T 1970 1970
72 Ireland 29630 A 1970 1970
73 Ireland 29631 A 1970 1970
74 Ireland 29632 C 1970 1970
75 Ireland 29633 T 1970 1970
76 Ireland 29634 A 1970 1970
77 Ireland 29635 C T 1970 1967 Tyr26Tyr
78 Ireland 29636 A 1970 1970
79 Ireland 29637 T 1970 1970
80 Ireland 29638 A 1970 1970
81 Ireland 29639 G 1970 1970
82 Ireland 29640 C T 1970 1969 Ala28Val
83 Ireland 29641 A 1970 1970
84 Ireland 29642 C 1970 1970
85 Ireland 29643 A 1970 1970
86 Ireland 29644 A 1970 1970
87 Ireland 29645 G T 1970 1396 Val30Leu
88 Ireland 29646 T 1970 1970
89 Ireland 29647 A 1970 1970
90 Ireland 29648 G 1970 1970
91 Ireland 29649 A 1970 1970
92 Ireland 29650 T 1970 1970
93 Ireland 29651 G 1970 1970
94 Ireland 29652 T 1970 1970
95 Ireland 29653 A 1970 1970
96 Ireland 29654 G 1970 1970
97 Ireland 29655 T 1970 1970
98 Ireland 29656 T 1970 1970
99 Ireland 29657 A 1970 1970
100 Ireland 29658 A 1970 1970
101 Ireland 29659 C 1970 1970
102 Ireland 29660 T 1970 1970
103 Ireland 29661 T 1970 1970
104 Ireland 29662 T 1970 1970
105 Ireland 29663 A 1970 1970
106 Ireland 29664 A 1970 1970
107 Ireland 29665 T 1970 1970
108 Ireland 29666 C T 1942 1941 Leu37Phe
109 Ireland 29667 T C 1942 1941 Leu37Pro
110 Ireland 29668 C 1942 1941
111 Ireland 29669 A 1942 1942
112 Ireland 29670 C 1942 1942
113 Ireland 29671 A 1942 1942
114 Ireland 29672 T 1942 1942
115 Ireland 29673 A 1942 1942
116 Ireland 29674 G 1942 1942