National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Iraq 29558 A 32 32
1 Iraq 29559 T 32 32
2 Iraq 29560 G 32 32
3 Iraq 29561 G 32 32
4 Iraq 29562 G 32 32
5 Iraq 29563 C 32 32
6 Iraq 29564 T 32 32
7 Iraq 29565 A 32 32
8 Iraq 29566 T 32 32
9 Iraq 29567 A 32 32
10 Iraq 29568 T 32 32
11 Iraq 29569 A 32 32
12 Iraq 29570 A 32 32
13 Iraq 29571 A 32 32
14 Iraq 29572 C 32 32
15 Iraq 29573 G 32 32
16 Iraq 29574 T 32 32
17 Iraq 29575 T 32 32
18 Iraq 29576 T 32 32
19 Iraq 29577 T 32 32
20 Iraq 29578 C 32 32
21 Iraq 29579 G 32 32
22 Iraq 29580 C 32 32
23 Iraq 29581 T 32 32
24 Iraq 29582 T 32 32
25 Iraq 29583 T 32 32
26 Iraq 29584 T 32 32
27 Iraq 29585 C 32 32
28 Iraq 29586 C 32 32
29 Iraq 29587 G 32 32
30 Iraq 29588 T 32 32
31 Iraq 29589 T 32 32
32 Iraq 29590 T 32 32
33 Iraq 29591 A 32 32
34 Iraq 29592 C 32 32
35 Iraq 29593 G 32 32
36 Iraq 29594 A 32 32
37 Iraq 29595 T 32 32
38 Iraq 29596 A 32 32
39 Iraq 29597 T 32 32
40 Iraq 29598 A 32 32
41 Iraq 29599 T 32 32
42 Iraq 29600 A 32 32
43 Iraq 29601 G 32 32
44 Iraq 29602 T 32 32
45 Iraq 29603 C 32 32
46 Iraq 29604 T 32 32
47 Iraq 29605 A 32 32
48 Iraq 29606 C 32 32
49 Iraq 29607 T 32 32
50 Iraq 29608 C 32 32
51 Iraq 29609 T 32 32
52 Iraq 29610 T 32 32
53 Iraq 29611 G 32 32
54 Iraq 29612 T 32 32
55 Iraq 29613 G 32 32
56 Iraq 29614 C 32 32
57 Iraq 29615 A 32 32
58 Iraq 29616 G 32 32
59 Iraq 29617 A 32 32
60 Iraq 29618 A 32 32
61 Iraq 29619 T 32 32
62 Iraq 29620 G 32 32
63 Iraq 29621 A 32 32
64 Iraq 29622 A 32 32
65 Iraq 29623 T 32 32
66 Iraq 29624 T 32 32
67 Iraq 29625 C 32 32
68 Iraq 29626 T 32 32
69 Iraq 29627 C 32 32
70 Iraq 29628 G 32 32
71 Iraq 29629 T 32 32
72 Iraq 29630 A 32 32
73 Iraq 29631 A 32 32
74 Iraq 29632 C 32 32
75 Iraq 29633 T 32 32
76 Iraq 29634 A 32 32
77 Iraq 29635 C 32 32
78 Iraq 29636 A 32 32
79 Iraq 29637 T 32 32
80 Iraq 29638 A 32 32
81 Iraq 29639 G 32 32
82 Iraq 29640 C 32 32
83 Iraq 29641 A 32 32
84 Iraq 29642 C 32 32
85 Iraq 29643 A 32 32
86 Iraq 29644 A 32 32
87 Iraq 29645 G 32 32
88 Iraq 29646 T 32 32
89 Iraq 29647 A 32 32
90 Iraq 29648 G 32 32
91 Iraq 29649 A 32 32
92 Iraq 29650 T 32 32
93 Iraq 29651 G 32 32
94 Iraq 29652 T 32 32
95 Iraq 29653 A 32 32
96 Iraq 29654 G 32 32
97 Iraq 29655 T 32 32
98 Iraq 29656 T 32 32
99 Iraq 29657 A 32 32
100 Iraq 29658 A 32 32
101 Iraq 29659 C 32 32
102 Iraq 29660 T 32 32
103 Iraq 29661 T 32 32
104 Iraq 29662 T 32 32
105 Iraq 29663 A 32 32
106 Iraq 29664 A 32 32
107 Iraq 29665 T 32 32
108 Iraq 29666 C 32 32
109 Iraq 29667 T 32 32
110 Iraq 29668 C 32 32
111 Iraq 29669 A 32 32
112 Iraq 29670 C 32 32
113 Iraq 29671 A 32 32
114 Iraq 29672 T 32 32
115 Iraq 29673 A 32 32
116 Iraq 29674 G 32 32