National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Iran 29558 A 36 36
1 Iran 29559 T 36 36
2 Iran 29560 G 36 36
3 Iran 29561 G 36 36
4 Iran 29562 G 36 36
5 Iran 29563 C 36 36
6 Iran 29564 T 36 36
7 Iran 29565 A 36 36
8 Iran 29566 T 36 36
9 Iran 29567 A 36 36
10 Iran 29568 T 36 36
11 Iran 29569 A 36 36
12 Iran 29570 A 36 36
13 Iran 29571 A 36 36
14 Iran 29572 C 36 36
15 Iran 29573 G 36 36
16 Iran 29574 T 36 36
17 Iran 29575 T 36 36
18 Iran 29576 T 36 36
19 Iran 29577 T 36 36
20 Iran 29578 C 36 36
21 Iran 29579 G 36 36
22 Iran 29580 C 36 36
23 Iran 29581 T 36 36
24 Iran 29582 T 36 36
25 Iran 29583 T 36 36
26 Iran 29584 T 36 36
27 Iran 29585 C 36 36
28 Iran 29586 C 36 36
29 Iran 29587 G 36 36
30 Iran 29588 T 36 36
31 Iran 29589 T 36 36
32 Iran 29590 T 36 36
33 Iran 29591 A 36 36
34 Iran 29592 C 36 36
35 Iran 29593 G 36 36
36 Iran 29594 A 36 36
37 Iran 29595 T 36 36
38 Iran 29596 A 36 36
39 Iran 29597 T 36 36
40 Iran 29598 A 36 36
41 Iran 29599 T 36 36
42 Iran 29600 A 36 36
43 Iran 29601 G 36 36
44 Iran 29602 T 36 36
45 Iran 29603 C 36 36
46 Iran 29604 T 36 36
47 Iran 29605 A 36 36
48 Iran 29606 C 36 36
49 Iran 29607 T 36 36
50 Iran 29608 C 36 36
51 Iran 29609 T 36 36
52 Iran 29610 T 36 36
53 Iran 29611 G 36 36
54 Iran 29612 T 36 36
55 Iran 29613 G 36 36
56 Iran 29614 C 36 36
57 Iran 29615 A 36 36
58 Iran 29616 G 36 36
59 Iran 29617 A 36 36
60 Iran 29618 A 36 36
61 Iran 29619 T 36 36
62 Iran 29620 G 36 36
63 Iran 29621 A 36 36
64 Iran 29622 A 36 36
65 Iran 29623 T 36 36
66 Iran 29624 T 36 36
67 Iran 29625 C 36 36
68 Iran 29626 T 36 36
69 Iran 29627 C 36 36
70 Iran 29628 G 36 36
71 Iran 29629 T 36 36
72 Iran 29630 A 36 36
73 Iran 29631 A 36 36
74 Iran 29632 C 36 36
75 Iran 29633 T 36 36
76 Iran 29634 A 36 36
77 Iran 29635 C 36 36
78 Iran 29636 A 36 36
79 Iran 29637 T 36 36
80 Iran 29638 A 36 36
81 Iran 29639 G 36 36
82 Iran 29640 C 36 36
83 Iran 29641 A 36 36
84 Iran 29642 C 36 36
85 Iran 29643 A 36 36
86 Iran 29644 A 36 36
87 Iran 29645 G 36 36
88 Iran 29646 T 36 36
89 Iran 29647 A 36 36
90 Iran 29648 G 36 36
91 Iran 29649 A 36 36
92 Iran 29650 T 36 36
93 Iran 29651 G 36 36
94 Iran 29652 T 36 36
95 Iran 29653 A 36 36
96 Iran 29654 G 36 36
97 Iran 29655 T 36 36
98 Iran 29656 T 36 36
99 Iran 29657 A 36 36
100 Iran 29658 A 36 36
101 Iran 29659 C 36 36
102 Iran 29660 T 36 36
103 Iran 29661 T 36 36
104 Iran 29662 T 36 36
105 Iran 29663 A 36 36
106 Iran 29664 A 36 36
107 Iran 29665 T 36 36
108 Iran 29666 C 36 36
109 Iran 29667 T 36 36
110 Iran 29668 C 36 36
111 Iran 29669 A 36 36
112 Iran 29670 C 36 36
113 Iran 29671 A 36 36
114 Iran 29672 T 36 36
115 Iran 29673 A 36 36
116 Iran 29674 G 36 36