National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G H I L M N P Q R S T V Y
*     2                                  
-     117                                  
?                                        
A     6                                  
C     3   1                              
D     3                   1              
F     12                                  
G     3                                  
H                                        
I     9                                  
L     12                                  
M     6                                  
N     16                                  
P     3                           1      
Q 1   3                                  
R     6   1                              
S     6                                  
T     6                                  
V     12                               1  
Y     9           1                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Indonesia 29558 A 296 296
1 Indonesia 29559 T 296 296
2 Indonesia 29560 G 296 296
3 Indonesia 29561 G 296 296
4 Indonesia 29562 G 296 296
5 Indonesia 29563 C 296 296
6 Indonesia 29564 T 296 296
7 Indonesia 29565 A 296 296
8 Indonesia 29566 T 296 296
9 Indonesia 29567 A 296 296
10 Indonesia 29568 T 296 296
11 Indonesia 29569 A 296 296
12 Indonesia 29570 A 296 296
13 Indonesia 29571 A 296 296
14 Indonesia 29572 C 296 296
15 Indonesia 29573 G 296 296
16 Indonesia 29574 T 296 296
17 Indonesia 29575 T G 296 295 Val6Val
18 Indonesia 29576 T 296 295
19 Indonesia 29577 T 296 295
20 Indonesia 29578 C 301 301
21 Indonesia 29579 G 301 301
22 Indonesia 29580 C 302 302
23 Indonesia 29581 T 302 302
24 Indonesia 29582 T 302 302
25 Indonesia 29583 T 302 302
26 Indonesia 29584 T 302 301
27 Indonesia 29585 C T 302 301 Pro10Ser
28 Indonesia 29586 C 302 302
29 Indonesia 29587 G 302 302
30 Indonesia 29588 T 302 302
31 Indonesia 29589 T 302 302
32 Indonesia 29590 T 302 302
33 Indonesia 29591 A 302 302
34 Indonesia 29592 C 302 302
35 Indonesia 29593 G 302 302
36 Indonesia 29594 A 302 302
37 Indonesia 29595 T 302 302
38 Indonesia 29596 A 302 302
39 Indonesia 29597 T C 302 301 Tyr14His
40 Indonesia 29598 A 302 302
41 Indonesia 29599 T 302 302
42 Indonesia 29600 A 302 302
43 Indonesia 29601 G 302 300
44 Indonesia 29602 T 302 300
45 Indonesia 29603 C 302 299
46 Indonesia 29604 T 302 300
47 Indonesia 29605 A 302 299
48 Indonesia 29606 C 302 300
49 Indonesia 29607 T 302 301
50 Indonesia 29608 C 302 301
51 Indonesia 29609 T 302 301
52 Indonesia 29610 T 302 301
53 Indonesia 29611 G 302 301
54 Indonesia 29612 T 302 301
55 Indonesia 29613 G 302 300
56 Indonesia 29614 C T 302 297 Cys19Cys
57 Indonesia 29615 A 302 301
58 Indonesia 29616 G 302 301
59 Indonesia 29617 A 302 301
60 Indonesia 29618 A 302 301
61 Indonesia 29619 T 302 301
62 Indonesia 29620 G 302 301
63 Indonesia 29621 A 302 301
64 Indonesia 29622 A 302 301
65 Indonesia 29623 T 302 301
66 Indonesia 29624 T 302 301
67 Indonesia 29625 C 302 302
68 Indonesia 29626 T 302 302
69 Indonesia 29627 C T 302 300 Arg24Cys
70 Indonesia 29628 G 302 302
71 Indonesia 29629 T 302 302
72 Indonesia 29630 A 302 302
73 Indonesia 29631 A 302 302
74 Indonesia 29632 C 302 302
75 Indonesia 29633 T 302 302
76 Indonesia 29634 A 302 302
77 Indonesia 29635 C T 302 301 Tyr26Tyr
78 Indonesia 29636 A 302 302
79 Indonesia 29637 T 302 302
80 Indonesia 29638 A 302 302
81 Indonesia 29639 G 302 302
82 Indonesia 29640 C 302 302
83 Indonesia 29641 A 302 302
84 Indonesia 29642 C T 302 292 Gln29*
85 Indonesia 29643 A 302 302
86 Indonesia 29644 A 302 302
87 Indonesia 29645 G 302 302
88 Indonesia 29646 T 302 302
89 Indonesia 29647 A 302 302
90 Indonesia 29648 G A 302 301 Asp31Asn
91 Indonesia 29649 A 302 302
92 Indonesia 29650 T 302 302
93 Indonesia 29651 G 302 302
94 Indonesia 29652 T 302 302
95 Indonesia 29653 A 302 302
96 Indonesia 29654 G 302 302
97 Indonesia 29655 T 302 302
98 Indonesia 29656 T 302 302
99 Indonesia 29657 A 302 302
100 Indonesia 29658 A 302 302
101 Indonesia 29659 C 302 302
102 Indonesia 29660 T 302 302
103 Indonesia 29661 T 302 302
104 Indonesia 29662 T 302 302
105 Indonesia 29663 A 302 302
106 Indonesia 29664 A 302 302
107 Indonesia 29665 T 302 302
108 Indonesia 29666 C 299 299
109 Indonesia 29667 T 299 299
110 Indonesia 29668 C 299 299
111 Indonesia 29669 A 299 299
112 Indonesia 29670 C 299 299
113 Indonesia 29671 A 299 299
114 Indonesia 29672 T 299 299
115 Indonesia 29673 A 299 299
116 Indonesia 29674 G 299 299