National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G H I K L M N P Q R S T V Y
*     2                                    
-     117                                    
?                                          
A     6                                 2  
C     3   1                                
D     3                                   1
F     12   1   1                            
G     3         1                          
H                                          
I     9                               1 2  
K                                          
L     12       1         1                  
M     6             2                      
N     16             1 3     3              
P     3                 1           1      
Q 1   3                                    
R     6   1       1     1                  
S     6       1                     1      
T     6 1           1                      
V     12 1               1               1  
Y     9   1                               2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 India 29558 A 4636 4636
1 India 29559 T 4636 4636
2 India 29560 G 4636 4636
3 India 29561 G 4636 4636
4 India 29562 G 4636 4636
5 India 29563 C T 4636 4634 Gly2Gly
6 India 29564 T 4637 4635
7 India 29565 A 4638 4637
8 India 29566 T C 4639 4638 Tyr3Tyr
9 India 29567 A G 4639 4634 Ile4Val
10 India 29568 T 4639 4639
11 India 29569 A 4639 4638
12 India 29570 A 4639 4639
13 India 29571 A 4639 4639
14 India 29572 C T 4639 4638 Asn5Asn
15 India 29573 G 4639 4638
16 India 29574 T 4639 4639
17 India 29575 T 4641 4641
18 India 29576 T 4641 4641
19 India 29577 T G 4641 4638 Phe7Cys
20 India 29578 C T 4646 4644 Phe7Phe
21 India 29579 G 4646 4645
22 India 29580 C T 4646 4643 Ala8Val
23 India 29581 T 4646 4643
24 India 29582 T 4646 4644
25 India 29583 T 4646 4645
26 India 29584 T 4646 4646
27 India 29585 C T 4646 4644 Pro10Ser
28 India 29586 C T 4646 4644 Pro10Leu
29 India 29587 G 4646 4646
30 India 29588 T 4646 4646
31 India 29589 T 4646 4646
32 India 29590 T 4646 4645
33 India 29591 A 4647 4647
34 India 29592 C 4647 4647
35 India 29593 G 4647 4647
36 India 29594 A G 4648 4647 Ile13Val
37 India 29595 T C 4647 4641 Ile13Thr
38 India 29596 A 4647 4646
39 India 29597 T 4648 4647
40 India 29598 A G 4647 4645 Tyr14Cys
41 India 29599 T 4647 4646
42 India 29600 A 4647 4646
43 India 29601 G 4648 4647
44 India 29602 T C 4648 4645 Ser15Ser
45 India 29603 C 4646 4645
46 India 29604 T 4646 4645
47 India 29605 A 4646 4645
48 India 29606 C 4646 4645
49 India 29607 T 4644 4643
50 India 29608 C A 4644 4642 Leu17Leu
51 India 29609 T 4644 4644
52 India 29610 T 4644 4644
53 India 29611 G 4644 4644
54 India 29612 T 4644 4643
55 India 29613 G 4644 4643
56 India 29614 C T 4644 4637 Cys19Cys
57 India 29615 A 4644 4643
58 India 29616 G 4645 4645
59 India 29617 A 4646 4646
60 India 29618 A 4646 4646
61 India 29619 T 4646 4646
62 India 29620 G T,C 4646 4644 Met21Ile-p.Met21Ile
63 India 29621 A 4646 4646
64 India 29622 A T 4645 4644 Asn22Ile
65 India 29623 T A 4645 4644 Asn22Lys
66 India 29624 T 4645 4645
67 India 29625 C T 4645 4643 Ser23Phe
68 India 29626 T 4645 4645
69 India 29627 C T 4645 4643 Arg24Cys
70 India 29628 G A,T 4645 4639 Arg24His-p.Arg24Leu
71 India 29629 T 4644 4644
72 India 29630 A 4644 4644
73 India 29631 A 4644 4644
74 India 29632 C T 4644 4641 Asn25Asn
75 India 29633 T 4644 4643
76 India 29634 A 4645 4644
77 India 29635 C T 4645 4641 Tyr26Tyr
78 India 29636 A 4644 4643
79 India 29637 T 4644 4643
80 India 29638 A 4644 4643
81 India 29639 G 4644 4644
82 India 29640 C T 4644 4641 Ala28Val
83 India 29641 A 4644 4644
84 India 29642 C T 4643 4636 Gln29*
85 India 29643 A 4643 4643
86 India 29644 A 4643 4643
87 India 29645 G T 4643 4626 Val30Leu
88 India 29646 T C 4642 4641 Val30Ala
89 India 29647 A G 4642 4641 Val30Val
90 India 29648 G T 4641 4631 Asp31Tyr
91 India 29649 A 4640 4640
92 India 29650 T 4640 4640
93 India 29651 G 4640 4640
94 India 29652 T 4640 4640
95 India 29653 A 4640 4640
96 India 29654 G 4640 4640
97 India 29655 T 4640 4640
98 India 29656 T 4640 4640
99 India 29657 A 4640 4640
100 India 29658 A 4639 4638
101 India 29659 C T,A 4639 4631 Asn34Lys-p.Asn34Asn
102 India 29660 T 4638 4638
103 India 29661 T 4638 4638
104 India 29662 T 4638 4638
105 India 29663 A 4638 4638
106 India 29664 A 4638 4638
107 India 29665 T G 4638 4637 Asn36Lys
108 India 29666 C T 4634 4624 Leu37Phe
109 India 29667 T 4633 4633
110 India 29668 C 4632 4632
111 India 29669 A G 4631 4630 Thr38Ala
112 India 29670 C T 4629 4625 Thr38Ile
113 India 29671 A 4628 4628
114 India 29672 T 4627 4626
115 India 29673 A 4625 4625
116 India 29674 G 4622 4622