National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             1  
C     3   1                            
D     3                                
F     12                                
G     3                                
I     9                             1  
L     12       1                        
M     6                                
N     16                 1              
P     3                                
Q     3                       1        
R     6   1         1                  
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Iceland 29558 A 4087 4087
1 Iceland 29559 T 4087 4087
2 Iceland 29560 G 4088 4088
3 Iceland 29561 G 4089 4089
4 Iceland 29562 G 4089 4088
5 Iceland 29563 C 4089 4089
6 Iceland 29564 T 4089 4087
7 Iceland 29565 A 4091 4091
8 Iceland 29566 T 4091 4091
9 Iceland 29567 A G 4091 4087 Ile4Val
10 Iceland 29568 T 4091 4090
11 Iceland 29569 A 4091 4090
12 Iceland 29570 A 4091 4091
13 Iceland 29571 A 4091 4090
14 Iceland 29572 C 4091 4091
15 Iceland 29573 G 4091 4089
16 Iceland 29574 T 4091 4089
17 Iceland 29575 T 4091 4090
18 Iceland 29576 T 4091 4090
19 Iceland 29577 T 4091 4090
20 Iceland 29578 C 4091 4089
21 Iceland 29579 G 4092 4089
22 Iceland 29580 C T 4092 4086 Ala8Val
23 Iceland 29581 T 4092 4087
24 Iceland 29582 T 4092 4091
25 Iceland 29583 T 4092 4090
26 Iceland 29584 T 4092 4089
27 Iceland 29585 C 4092 4088
28 Iceland 29586 C 4092 4090
29 Iceland 29587 G 4092 4090
30 Iceland 29588 T 4092 4085
31 Iceland 29589 T 4092 4090
32 Iceland 29590 T 4092 4089
33 Iceland 29591 A 4092 4090
34 Iceland 29592 C 4091 4090
35 Iceland 29593 G 4091 4088
36 Iceland 29594 A 4091 4088
37 Iceland 29595 T 4091 4090
38 Iceland 29596 A 4091 4089
39 Iceland 29597 T 4091 4091
40 Iceland 29598 A 4091 4089
41 Iceland 29599 T 4090 4087
42 Iceland 29600 A 4090 4087
43 Iceland 29601 G 4090 4087
44 Iceland 29602 T 4090 4088
45 Iceland 29603 C 4089 4088
46 Iceland 29604 T 4089 4087
47 Iceland 29605 A 4089 4088
48 Iceland 29606 C 4089 4089
49 Iceland 29607 T 4089 4088
50 Iceland 29608 C 4089 4087
51 Iceland 29609 T 4089 4087
52 Iceland 29610 T 4089 4089
53 Iceland 29611 G 4089 4088
54 Iceland 29612 T 4089 4086
55 Iceland 29613 G 4088 4085
56 Iceland 29614 C T 4088 4080 Cys19Cys
57 Iceland 29615 A 4088 4085
58 Iceland 29616 G 4088 4087
59 Iceland 29617 A 4089 4087
60 Iceland 29618 A 4089 4087
61 Iceland 29619 T 4089 4087
62 Iceland 29620 G 4089 4088
63 Iceland 29621 A 4089 4086
64 Iceland 29622 A 4089 4089
65 Iceland 29623 T 4089 4088
66 Iceland 29624 T 4089 4087
67 Iceland 29625 C 4088 4087
68 Iceland 29626 T 4088 4087
69 Iceland 29627 C T 4089 4085 Arg24Cys
70 Iceland 29628 G T 4087 4083 Arg24Leu
71 Iceland 29629 T 4088 4086
72 Iceland 29630 A 4088 4087
73 Iceland 29631 A 4088 4087
74 Iceland 29632 C 4088 4086
75 Iceland 29633 T 4088 4085
76 Iceland 29634 A 4088 4086
77 Iceland 29635 C 4088 4088
78 Iceland 29636 A 4087 4086
79 Iceland 29637 T 4086 4084
80 Iceland 29638 A 4085 4081
81 Iceland 29639 G 4085 4082
82 Iceland 29640 C 4085 4081
83 Iceland 29641 A 4085 4083
84 Iceland 29642 C 4084 4081
85 Iceland 29643 A G 4083 4081 Gln29Arg
86 Iceland 29644 A 4083 4082
87 Iceland 29645 G T 4083 1359 Val30Leu
88 Iceland 29646 T 4083 4082
89 Iceland 29647 A 4083 4080
90 Iceland 29648 G 4083 4083
91 Iceland 29649 A 4082 4081
92 Iceland 29650 T 4082 4079
93 Iceland 29651 G 4081 4080
94 Iceland 29652 T 4081 4080
95 Iceland 29653 A 4081 4081
96 Iceland 29654 G 4081 4079
97 Iceland 29655 T 4080 4079
98 Iceland 29656 T 4080 4080
99 Iceland 29657 A 4080 4080
100 Iceland 29658 A 4080 4080
101 Iceland 29659 C T 4078 4075 Asn34Asn
102 Iceland 29660 T 4078 4077
103 Iceland 29661 T 4077 4077
104 Iceland 29662 T 4076 4076
105 Iceland 29663 A 4075 4075
106 Iceland 29664 A 4075 4075
107 Iceland 29665 T 4075 4075
108 Iceland 29666 C T 4008 4006 Leu37Phe
109 Iceland 29667 T 4007 4007
110 Iceland 29668 C 4006 4004
111 Iceland 29669 A 4006 4004
112 Iceland 29670 C 4006 4006
113 Iceland 29671 A 4004 4003
114 Iceland 29672 T 4003 4003
115 Iceland 29673 A 4003 4003
116 Iceland 29674 G 4003 4003