National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Hungary 29558 A 278 278
1 Hungary 29559 T 278 278
2 Hungary 29560 G 278 278
3 Hungary 29561 G 278 278
4 Hungary 29562 G 278 278
5 Hungary 29563 C 278 278
6 Hungary 29564 T 278 278
7 Hungary 29565 A 278 278
8 Hungary 29566 T 278 278
9 Hungary 29567 A 278 278
10 Hungary 29568 T 278 278
11 Hungary 29569 A 278 278
12 Hungary 29570 A 278 278
13 Hungary 29571 A 278 278
14 Hungary 29572 C 278 278
15 Hungary 29573 G 278 278
16 Hungary 29574 T 278 278
17 Hungary 29575 T 278 278
18 Hungary 29576 T 278 278
19 Hungary 29577 T 278 278
20 Hungary 29578 C 278 278
21 Hungary 29579 G 278 278
22 Hungary 29580 C 278 278
23 Hungary 29581 T 278 278
24 Hungary 29582 T 278 278
25 Hungary 29583 T 278 278
26 Hungary 29584 T 278 278
27 Hungary 29585 C 278 278
28 Hungary 29586 C 278 278
29 Hungary 29587 G 278 278
30 Hungary 29588 T 278 278
31 Hungary 29589 T 278 278
32 Hungary 29590 T 278 278
33 Hungary 29591 A 278 278
34 Hungary 29592 C 278 278
35 Hungary 29593 G 278 278
36 Hungary 29594 A 278 278
37 Hungary 29595 T 278 278
38 Hungary 29596 A 278 278
39 Hungary 29597 T 278 278
40 Hungary 29598 A 278 278
41 Hungary 29599 T 278 278
42 Hungary 29600 A 278 278
43 Hungary 29601 G 278 278
44 Hungary 29602 T 278 278
45 Hungary 29603 C 278 278
46 Hungary 29604 T 278 278
47 Hungary 29605 A 278 278
48 Hungary 29606 C 278 278
49 Hungary 29607 T 278 278
50 Hungary 29608 C 278 278
51 Hungary 29609 T 278 278
52 Hungary 29610 T 278 278
53 Hungary 29611 G 278 278
54 Hungary 29612 T 278 278
55 Hungary 29613 G 278 278
56 Hungary 29614 C 278 278
57 Hungary 29615 A 278 278
58 Hungary 29616 G 278 278
59 Hungary 29617 A 278 278
60 Hungary 29618 A 278 278
61 Hungary 29619 T 278 278
62 Hungary 29620 G 278 278
63 Hungary 29621 A 278 278
64 Hungary 29622 A 278 278
65 Hungary 29623 T 278 278
66 Hungary 29624 T 278 278
67 Hungary 29625 C 278 278
68 Hungary 29626 T 278 278
69 Hungary 29627 C 278 278
70 Hungary 29628 G 278 278
71 Hungary 29629 T 278 278
72 Hungary 29630 A 278 278
73 Hungary 29631 A 278 278
74 Hungary 29632 C 278 278
75 Hungary 29633 T 278 278
76 Hungary 29634 A 278 278
77 Hungary 29635 C 278 278
78 Hungary 29636 A 278 278
79 Hungary 29637 T 278 278
80 Hungary 29638 A 278 278
81 Hungary 29639 G 278 278
82 Hungary 29640 C 278 278
83 Hungary 29641 A 278 278
84 Hungary 29642 C 278 278
85 Hungary 29643 A 278 278
86 Hungary 29644 A 278 278
87 Hungary 29645 G 278 278
88 Hungary 29646 T 278 278
89 Hungary 29647 A 278 278
90 Hungary 29648 G 278 278
91 Hungary 29649 A 278 278
92 Hungary 29650 T 278 278
93 Hungary 29651 G 278 278
94 Hungary 29652 T 278 278
95 Hungary 29653 A 278 278
96 Hungary 29654 G 278 278
97 Hungary 29655 T 278 278
98 Hungary 29656 T 278 278
99 Hungary 29657 A 278 278
100 Hungary 29658 A 278 278
101 Hungary 29659 C 278 278
102 Hungary 29660 T 278 278
103 Hungary 29661 T 278 278
104 Hungary 29662 T 278 278
105 Hungary 29663 A 278 278
106 Hungary 29664 A 278 278
107 Hungary 29665 T 278 278
108 Hungary 29666 C 270 270
109 Hungary 29667 T 269 269
110 Hungary 29668 C 269 269
111 Hungary 29669 A 269 269
112 Hungary 29670 C 269 269
113 Hungary 29671 A 269 269
114 Hungary 29672 T 269 269
115 Hungary 29673 A 269 269
116 Hungary 29674 G 269 269