National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Guatemala 29558 A 32 32
1 Guatemala 29559 T 32 32
2 Guatemala 29560 G 32 32
3 Guatemala 29561 G 32 32
4 Guatemala 29562 G 32 32
5 Guatemala 29563 C 32 32
6 Guatemala 29564 T 32 32
7 Guatemala 29565 A 32 32
8 Guatemala 29566 T 32 32
9 Guatemala 29567 A 32 32
10 Guatemala 29568 T 32 32
11 Guatemala 29569 A 32 32
12 Guatemala 29570 A 32 32
13 Guatemala 29571 A 32 32
14 Guatemala 29572 C 32 32
15 Guatemala 29573 G 32 32
16 Guatemala 29574 T 32 32
17 Guatemala 29575 T 32 32
18 Guatemala 29576 T 32 32
19 Guatemala 29577 T 32 32
20 Guatemala 29578 C 32 32
21 Guatemala 29579 G 32 32
22 Guatemala 29580 C 32 32
23 Guatemala 29581 T 32 32
24 Guatemala 29582 T 32 32
25 Guatemala 29583 T 32 32
26 Guatemala 29584 T 32 32
27 Guatemala 29585 C 32 32
28 Guatemala 29586 C 32 32
29 Guatemala 29587 G 32 32
30 Guatemala 29588 T 32 32
31 Guatemala 29589 T 32 32
32 Guatemala 29590 T 32 32
33 Guatemala 29591 A 32 32
34 Guatemala 29592 C 32 32
35 Guatemala 29593 G 32 32
36 Guatemala 29594 A 32 32
37 Guatemala 29595 T 32 32
38 Guatemala 29596 A 32 32
39 Guatemala 29597 T 32 32
40 Guatemala 29598 A 32 32
41 Guatemala 29599 T 32 32
42 Guatemala 29600 A 32 32
43 Guatemala 29601 G 32 32
44 Guatemala 29602 T 32 32
45 Guatemala 29603 C 32 32
46 Guatemala 29604 T 32 32
47 Guatemala 29605 A 32 32
48 Guatemala 29606 C 32 32
49 Guatemala 29607 T 32 32
50 Guatemala 29608 C 32 32
51 Guatemala 29609 T 32 32
52 Guatemala 29610 T 32 32
53 Guatemala 29611 G 32 32
54 Guatemala 29612 T 32 32
55 Guatemala 29613 G 32 32
56 Guatemala 29614 C 32 32
57 Guatemala 29615 A 32 32
58 Guatemala 29616 G 32 32
59 Guatemala 29617 A 32 32
60 Guatemala 29618 A 32 32
61 Guatemala 29619 T 32 32
62 Guatemala 29620 G 32 32
63 Guatemala 29621 A 32 32
64 Guatemala 29622 A 32 32
65 Guatemala 29623 T 32 32
66 Guatemala 29624 T 32 32
67 Guatemala 29625 C 32 32
68 Guatemala 29626 T 32 32
69 Guatemala 29627 C 32 32
70 Guatemala 29628 G 32 32
71 Guatemala 29629 T 32 32
72 Guatemala 29630 A 32 32
73 Guatemala 29631 A 32 32
74 Guatemala 29632 C 32 32
75 Guatemala 29633 T 32 32
76 Guatemala 29634 A 32 32
77 Guatemala 29635 C 32 32
78 Guatemala 29636 A 32 32
79 Guatemala 29637 T 32 32
80 Guatemala 29638 A 32 32
81 Guatemala 29639 G 32 32
82 Guatemala 29640 C 32 32
83 Guatemala 29641 A 32 32
84 Guatemala 29642 C 32 32
85 Guatemala 29643 A 32 32
86 Guatemala 29644 A 32 32
87 Guatemala 29645 G 32 32
88 Guatemala 29646 T 32 32
89 Guatemala 29647 A 32 32
90 Guatemala 29648 G 32 32
91 Guatemala 29649 A 32 32
92 Guatemala 29650 T 32 32
93 Guatemala 29651 G 32 32
94 Guatemala 29652 T 32 32
95 Guatemala 29653 A 32 32
96 Guatemala 29654 G 32 32
97 Guatemala 29655 T 32 32
98 Guatemala 29656 T 32 32
99 Guatemala 29657 A 32 32
100 Guatemala 29658 A 32 32
101 Guatemala 29659 C 32 32
102 Guatemala 29660 T 32 32
103 Guatemala 29661 T 32 32
104 Guatemala 29662 T 32 32
105 Guatemala 29663 A 32 32
106 Guatemala 29664 A 32 32
107 Guatemala 29665 T 32 32
108 Guatemala 29666 C 32 32
109 Guatemala 29667 T 32 32
110 Guatemala 29668 C 32 32
111 Guatemala 29669 A 32 32
112 Guatemala 29670 C 32 32
113 Guatemala 29671 A 32 32
114 Guatemala 29672 T 32 32
115 Guatemala 29673 A 32 32
116 Guatemala 29674 G 32 32