National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Greece 29558 A 138 138
1 Greece 29559 T 138 138
2 Greece 29560 G 138 138
3 Greece 29561 G 138 138
4 Greece 29562 G 138 138
5 Greece 29563 C 138 138
6 Greece 29564 T 138 138
7 Greece 29565 A 138 138
8 Greece 29566 T 138 138
9 Greece 29567 A 138 138
10 Greece 29568 T 138 138
11 Greece 29569 A 138 138
12 Greece 29570 A 138 138
13 Greece 29571 A 138 138
14 Greece 29572 C 138 138
15 Greece 29573 G 138 138
16 Greece 29574 T 138 138
17 Greece 29575 T 138 138
18 Greece 29576 T 138 138
19 Greece 29577 T 138 138
20 Greece 29578 C 138 138
21 Greece 29579 G 138 138
22 Greece 29580 C 138 138
23 Greece 29581 T 138 138
24 Greece 29582 T 138 138
25 Greece 29583 T 138 138
26 Greece 29584 T 138 138
27 Greece 29585 C 138 138
28 Greece 29586 C 138 138
29 Greece 29587 G 138 138
30 Greece 29588 T 138 138
31 Greece 29589 T 138 138
32 Greece 29590 T 138 138
33 Greece 29591 A 138 138
34 Greece 29592 C 138 138
35 Greece 29593 G 138 138
36 Greece 29594 A 138 138
37 Greece 29595 T 137 137
38 Greece 29596 A 137 137
39 Greece 29597 T 137 137
40 Greece 29598 A 137 137
41 Greece 29599 T 137 137
42 Greece 29600 A 137 137
43 Greece 29601 G 137 137
44 Greece 29602 T 137 137
45 Greece 29603 C 137 137
46 Greece 29604 T 137 137
47 Greece 29605 A 137 137
48 Greece 29606 C 137 137
49 Greece 29607 T 137 137
50 Greece 29608 C 137 137
51 Greece 29609 T 137 137
52 Greece 29610 T 137 137
53 Greece 29611 G 137 137
54 Greece 29612 T 137 137
55 Greece 29613 G 137 137
56 Greece 29614 C 137 137
57 Greece 29615 A 137 137
58 Greece 29616 G 137 137
59 Greece 29617 A 137 137
60 Greece 29618 A 137 137
61 Greece 29619 T 137 137
62 Greece 29620 G 137 137
63 Greece 29621 A 137 137
64 Greece 29622 A 137 137
65 Greece 29623 T 137 137
66 Greece 29624 T 137 137
67 Greece 29625 C 137 137
68 Greece 29626 T 137 137
69 Greece 29627 C 137 137
70 Greece 29628 G 137 137
71 Greece 29629 T 137 137
72 Greece 29630 A 137 137
73 Greece 29631 A 137 137
74 Greece 29632 C 137 137
75 Greece 29633 T 137 137
76 Greece 29634 A 137 137
77 Greece 29635 C 137 137
78 Greece 29636 A 137 137
79 Greece 29637 T 137 137
80 Greece 29638 A 137 137
81 Greece 29639 G 137 137
82 Greece 29640 C 137 137
83 Greece 29641 A 137 137
84 Greece 29642 C 137 137
85 Greece 29643 A 137 137
86 Greece 29644 A 137 137
87 Greece 29645 G 137 137
88 Greece 29646 T 137 137
89 Greece 29647 A 137 137
90 Greece 29648 G 137 137
91 Greece 29649 A 137 137
92 Greece 29650 T 137 137
93 Greece 29651 G 137 137
94 Greece 29652 T 137 137
95 Greece 29653 A 137 137
96 Greece 29654 G 137 137
97 Greece 29655 T 137 137
98 Greece 29656 T 137 137
99 Greece 29657 A 137 137
100 Greece 29658 A 137 137
101 Greece 29659 C 137 137
102 Greece 29660 T 137 137
103 Greece 29661 T 137 137
104 Greece 29662 T 137 137
105 Greece 29663 A 137 137
106 Greece 29664 A 137 137
107 Greece 29665 T 137 137
108 Greece 29666 C 137 137
109 Greece 29667 T 137 137
110 Greece 29668 C 137 137
111 Greece 29669 A 137 137
112 Greece 29670 C 137 137
113 Greece 29671 A 137 137
114 Greece 29672 T 137 137
115 Greece 29673 A 137 137
116 Greece 29674 G 137 137