National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Ghana 29558 A 112 112
1 Ghana 29559 T 112 112
2 Ghana 29560 G 112 112
3 Ghana 29561 G 112 112
4 Ghana 29562 G 112 112
5 Ghana 29563 C 112 112
6 Ghana 29564 T 112 112
7 Ghana 29565 A 112 112
8 Ghana 29566 T 112 112
9 Ghana 29567 A 112 112
10 Ghana 29568 T 112 112
11 Ghana 29569 A 112 112
12 Ghana 29570 A 112 112
13 Ghana 29571 A 112 112
14 Ghana 29572 C 112 112
15 Ghana 29573 G 112 112
16 Ghana 29574 T 112 112
17 Ghana 29575 T 112 112
18 Ghana 29576 T 112 112
19 Ghana 29577 T 112 112
20 Ghana 29578 C 112 112
21 Ghana 29579 G 112 112
22 Ghana 29580 C 112 112
23 Ghana 29581 T 112 112
24 Ghana 29582 T 112 112
25 Ghana 29583 T 112 112
26 Ghana 29584 T 112 112
27 Ghana 29585 C 112 112
28 Ghana 29586 C 112 112
29 Ghana 29587 G 112 112
30 Ghana 29588 T 112 112
31 Ghana 29589 T 112 112
32 Ghana 29590 T 112 112
33 Ghana 29591 A 112 112
34 Ghana 29592 C 112 112
35 Ghana 29593 G 112 112
36 Ghana 29594 A 112 112
37 Ghana 29595 T 112 112
38 Ghana 29596 A 112 112
39 Ghana 29597 T 112 112
40 Ghana 29598 A 112 112
41 Ghana 29599 T 112 112
42 Ghana 29600 A 112 112
43 Ghana 29601 G 112 112
44 Ghana 29602 T 112 112
45 Ghana 29603 C 112 112
46 Ghana 29604 T 112 112
47 Ghana 29605 A 112 112
48 Ghana 29606 C 112 112
49 Ghana 29607 T 112 112
50 Ghana 29608 C 112 112
51 Ghana 29609 T 112 112
52 Ghana 29610 T 112 112
53 Ghana 29611 G 112 112
54 Ghana 29612 T 112 112
55 Ghana 29613 G 112 112
56 Ghana 29614 C 112 112
57 Ghana 29615 A 112 112
58 Ghana 29616 G 112 112
59 Ghana 29617 A 112 112
60 Ghana 29618 A 112 112
61 Ghana 29619 T 112 112
62 Ghana 29620 G 112 112
63 Ghana 29621 A 112 112
64 Ghana 29622 A 112 112
65 Ghana 29623 T 112 112
66 Ghana 29624 T 112 112
67 Ghana 29625 C 112 112
68 Ghana 29626 T 112 112
69 Ghana 29627 C 112 112
70 Ghana 29628 G 112 112
71 Ghana 29629 T 112 112
72 Ghana 29630 A 112 112
73 Ghana 29631 A 112 112
74 Ghana 29632 C 112 112
75 Ghana 29633 T 112 112
76 Ghana 29634 A 112 112
77 Ghana 29635 C 112 112
78 Ghana 29636 A 112 112
79 Ghana 29637 T 112 112
80 Ghana 29638 A 112 112
81 Ghana 29639 G 112 112
82 Ghana 29640 C 112 111
83 Ghana 29641 A 112 112
84 Ghana 29642 C 112 112
85 Ghana 29643 A 112 112
86 Ghana 29644 A 112 112
87 Ghana 29645 G 112 112
88 Ghana 29646 T 112 112
89 Ghana 29647 A 112 112
90 Ghana 29648 G 112 112
91 Ghana 29649 A 112 112
92 Ghana 29650 T 112 112
93 Ghana 29651 G 112 112
94 Ghana 29652 T 112 112
95 Ghana 29653 A 112 112
96 Ghana 29654 G 112 112
97 Ghana 29655 T 112 112
98 Ghana 29656 T 112 112
99 Ghana 29657 A 112 112
100 Ghana 29658 A 112 112
101 Ghana 29659 C 112 112
102 Ghana 29660 T 112 112
103 Ghana 29661 T 112 112
104 Ghana 29662 T 112 112
105 Ghana 29663 A 112 112
106 Ghana 29664 A 112 112
107 Ghana 29665 T 112 112
108 Ghana 29666 C 93 93
109 Ghana 29667 T 93 93
110 Ghana 29668 C 93 92
111 Ghana 29669 A 93 93
112 Ghana 29670 C 93 93
113 Ghana 29671 A 93 93
114 Ghana 29672 T 93 93
115 Ghana 29673 A 93 93
116 Ghana 29674 G 93 93